Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J23
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    80   3e-17
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    80   3e-17
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    24   2.4  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    23   5.4  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    23   5.4  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    23   7.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    22   9.5  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 80.2 bits (189), Expect = 3e-17
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +3

Query: 72  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 224
           ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R
Sbjct: 5   AQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIR 55


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 80.2 bits (189), Expect = 3e-17
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +3

Query: 72  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 224
           ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R
Sbjct: 5   AQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIR 55


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 848

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 62 RSLLLLFIFFQCRRWYS 12
          RS+L + +FF C+ W++
Sbjct: 3  RSVLTIILFFSCQFWHA 19


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 220 TVYLAFENTGCWPVSCSSTLAARVSLSPDSPTQMFRQSFLI 98
           TV +   +TG  P+S     A R  +S + P Q+ R + +I
Sbjct: 64  TVGIKESDTGLAPISFWDVAADRQRMSEEQPLQVARCTKII 104


>SPAC105.01c |||potassium ion/proton
          antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 898

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 54 SSPFYLFSMQAVVLAPLC 1
          S P  LF +QA+++  LC
Sbjct: 27 SDPLLLFIVQAIIIIALC 44


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -2

Query: 147 AYHQILRHRCSGRV 106
           A+++++ HRC G+V
Sbjct: 329 AFNRLMTHRCKGKV 342


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 92  SSYQKTLPEHLCRRI 136
           S+YQ+T  E++C+R+
Sbjct: 117 STYQRTRVENVCKRL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,507
Number of Sequences: 5004
Number of extensions: 12368
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)