Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J23
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 81 2e-16
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 81 2e-16
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 81 2e-16
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 80 2e-16
01_07_0141 - 41390483-41391448 25 6.2
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 25 6.2
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800... 25 6.2
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 25 8.2
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 25 8.2
01_01_0582 - 4317216-4317731 25 8.2
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 80.6 bits (190), Expect = 2e-16
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 78 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 224
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVR 57
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 80.6 bits (190), Expect = 2e-16
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 78 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 224
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVR 57
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 80.6 bits (190), Expect = 2e-16
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 78 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 224
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVR 57
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 80.2 bits (189), Expect = 2e-16
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 78 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 224
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 83
>01_07_0141 - 41390483-41391448
Length = 321
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 114 LNICVGESGDRLTRAAKVLEQL 179
+ +C G SGD L A+KV E L
Sbjct: 10 VGVCWGMSGDNLPPASKVTEML 31
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 185 AGKLFQHLSGPS*PITRFSDTDVQAEFSDMKIPHNIF 75
AG + + L P P +S +D A F + +PHN+F
Sbjct: 233 AGGVIEGLFIPR-PKGDYSTSDAVAMFGSLVVPHNLF 268
>01_03_0134 +
12879254-12879596,12879689-12879796,12879905-12880000,
12880090-12880182,12880861-12880949,12881313-12881588,
12881656-12881808
Length = 385
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 104 SDMKIPHNIFRIVFRSLLLLFIF 36
S ++ PH +++F +LLLLF F
Sbjct: 18 SPLQSPHKQQQLIFAALLLLFFF 40
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 208 AFENTGCWPVS 176
+FENTGCW S
Sbjct: 884 SFENTGCWDTS 894
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 120 ICVGESGDRLTRAAKVLEQLTGQ 188
+CV + D +T A +LE +TG+
Sbjct: 242 VCVSDIYDEITLARDILESVTGE 264
>01_01_0582 - 4317216-4317731
Length = 171
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 196 TGCWPVSCSSTLAARVSLSPDSPTQMF 116
TGC P S S+ AARV S Q F
Sbjct: 113 TGCVPASSSAAAAARVPYDAYSYAQNF 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,254,454
Number of Sequences: 37544
Number of extensions: 81826
Number of successful extensions: 243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -