Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J22
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422...    28   1.6  
02_05_1145 + 34429060-34429401,34430053-34430967                       27   2.1  
09_02_0383 - 8259156-8261843                                           27   2.7  
02_03_0251 + 16849905-16851308                                         27   2.7  
02_03_0249 + 16826157-16827578,16827775-16827777                       27   2.7  
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343...    26   6.3  
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596...    26   6.3  
08_02_0304 + 15568432-15568455,15569609-15569681,15569824-155699...    26   6.3  
02_03_0259 + 16934848-16935599,16935659-16935911                       26   6.3  

>12_02_0849 -
           23640091-23640279,23640537-23640677,23640756-23642203,
           23642300-23642372,23642452-23642572,23642689-23642791,
           23642979-23643052,23643140-23643285,23643368-23643476,
           23643580-23643704,23643989-23644342,23644440-23644503,
           23644581-23645032
          Length = 1132

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 197 WNKSSQ----VLNKGSCEKYL*PTSMYESMKSRGSERGVKIVASGR 72
           WN+SS     V NK SC+++L     Y+S     S  G+K  AS R
Sbjct: 442 WNRSSHPKKSVTNKESCKEFLEDFGDYDSDDLNESFTGLKTSASHR 487


>02_05_1145 + 34429060-34429401,34430053-34430967
          Length = 418

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 125 SMKSRGSERGVKIVASGRTWSLPTRPREKGVILI 24
           S  S  S        SGR WS P  PR +  +L+
Sbjct: 199 SSSSSASSSSESFSGSGRAWSAPVSPRPEPPVLV 232


>09_02_0383 - 8259156-8261843
          Length = 895

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 219 SSHPLRLINRFVNLLPSILSTCPN 290
           S+  + L+  FV  LPS+L +CPN
Sbjct: 519 SATTISLMCNFVESLPSVLPSCPN 542


>02_03_0251 + 16849905-16851308
          Length = 467

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 33  HAFLPWAGRQRPRPSTCN 86
           HAF P AGR RP P   N
Sbjct: 81  HAFYPLAGRVRPTPGETN 98


>02_03_0249 + 16826157-16827578,16827775-16827777
          Length = 474

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 33  HAFLPWAGRQRPRPSTCN 86
           HAF P AGR RP P   N
Sbjct: 83  HAFYPLAGRVRPTPGETN 100


>10_08_0451 +
           18033065-18033253,18033746-18033805,18034256-18034324,
           18034751-18034786,18035081-18035146,18035345-18035443,
           18035543-18035620,18035724-18035802,18035999-18036093,
           18036251-18036335,18036505-18036698,18036804-18036922,
           18037015-18037057
          Length = 403

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 66  PRPSTCNDLDTSFASSTFHTFIHARRLKVL 155
           P P  C D D ++  +  H  +H   LK++
Sbjct: 36  PPPPPCTDYDMAYFKAYSHIGVHEEMLKIV 65


>09_02_0221 +
           5962606-5963197,5963711-5963837,5963994-5964100,
           5964185-5964328,5964700-5964822,5964921-5965103,
           5965540-5965718,5965797-5965823
          Length = 493

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 95  HLFRFLYFSYFHTCSSVKGTFRSCLYLRLDSI 190
           HLF F+    F +C  V  TF  CL + +  I
Sbjct: 138 HLFTFVPVIAFFSCDIVSNTFVICLLVTMGYI 169


>08_02_0304 +
           15568432-15568455,15569609-15569681,15569824-15569992,
           15570224-15570245,15570289-15570342,15570566-15570574
          Length = 116

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 45  PWAGRQRPRPSTCNDLDTSFASSTF 119
           PW G+  PRPS      T   S+ F
Sbjct: 19  PWRGKTLPRPSNKRGYGTGIPSNNF 43


>02_03_0259 + 16934848-16935599,16935659-16935911
          Length = 334

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 33  HAFLPWAGRQRPRPSTCN 86
           HAF P A R RP PS  N
Sbjct: 86  HAFYPLASRIRPTPSETN 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,883,552
Number of Sequences: 37544
Number of extensions: 133228
Number of successful extensions: 298
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)