Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J22
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032628-3|CAA21554.2|  164|Caenorhabditis elegans Hypothetical ...    29   0.62 
Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical p...    26   4.4  
Z48241-1|CAA88285.1|  346|Caenorhabditis elegans Hypothetical pr...    25   7.6  

>AL032628-3|CAA21554.2|  164|Caenorhabditis elegans Hypothetical
           protein Y38H6A.2 protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 104 RFLYFSYFHTCSSVKGTFRSCLYLRLDSICSIY 202
           R LYF  F T SSV    R C    + SIC  Y
Sbjct: 11  RILYFFQFKTNSSVANNVRYCDGTGVSSICQTY 43


>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 98  LFRFLYFSYFHTCSSVKGTFRSCLYLRLDSICSIYVRL 211
           L ++  FS+    SSV+ +F   LYL+  S   +YV L
Sbjct: 93  LVQYPQFSWLFVASSVETSFHYTLYLQFTSSVLLYVFL 130


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 6   RFKNHVN*YHAFLPWAGRQRPRPSTCNDLDTSFASSTFHTFI 131
           + KN +     FLPW  R  P  S C+ +       T H  I
Sbjct: 615 KMKNLLPNVEIFLPWPQRFTPSLSQCSSVQAMVIPETNHQLI 656


>Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical
           protein C14A4.15 protein.
          Length = 303

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +3

Query: 108 SSTF-HTFIHARRLKVLFAAA 167
           SSTF H F+ AR+++ +FAAA
Sbjct: 276 SSTFRHKFLEARKIRRIFAAA 296


>Z48241-1|CAA88285.1|  346|Caenorhabditis elegans Hypothetical
           protein C32A3.2 protein.
          Length = 346

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +2

Query: 104 RFLYFSYFHTCSSVKGTFRSCLYLRLDSICSIYVRLG 214
           R L+  YF    S+   FR+   LR  S+CSI VRLG
Sbjct: 28  RVLFSQYFFLSFSL--FFRAIFMLR--SLCSIAVRLG 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,312,755
Number of Sequences: 27780
Number of extensions: 102075
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)