Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J21
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   130   6e-32
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   126   1e-30
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   4.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   5.9  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    24   7.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    24   7.8  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  130 bits (314), Expect = 6e-32
 Identities = 59/100 (59%), Positives = 77/100 (77%)
 Frame = +3

Query: 48  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFAVSLADLQADSDA 227
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+  VSLADLQ   D 
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 228 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKW 347
           E SFRK +L  ED+QG++ L +F+G D+T+DKLR +V+KW
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKW 117


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  126 bits (303), Expect = 1e-30
 Identities = 56/100 (56%), Positives = 77/100 (77%)
 Frame = +3

Query: 48  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFAVSLADLQADSDA 227
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+  VSLADLQ   D 
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 228 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKW 347
           E +FRK +L  ED+QG++ L +F+G+ +T+DKLR +V+KW
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKW 117


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 128 PCQSHPGNKNCI*GSKGACF 187
           PC  H   K C  G  GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 169  PSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQ 74
            PSD+ F  W +L R+V +  +  +   LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 308 VHAVEIAENITSLDILSDKSELAERPFRI 222
           VH++      +  +IL+D S L  RPF +
Sbjct: 36  VHSISKERRDSLTEILNDSSSLPARPFSL 64


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 149 SLGAIDKGGAHLSLGEHGRRFNIVPVFT 66
           +LGAID  G    LGE    F + P F+
Sbjct: 858 NLGAIDSEGVLTKLGEQMSLFPLSPRFS 885


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,036
Number of Sequences: 5004
Number of extensions: 27261
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)