Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J21
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 149 8e-37
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 149 8e-37
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 148 1e-36
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 1.3
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 28 2.3
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 2.3
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 27 3.1
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 27 4.0
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 5.3
09_02_0568 + 10748227-10748434,10749004-10749398 26 7.1
02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326... 26 7.1
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 26 9.3
02_05_0952 + 33022742-33023125 26 9.3
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 149 bits (360), Expect = 8e-37
Identities = 72/99 (72%), Positives = 81/99 (81%)
Frame = +3
Query: 51 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFAVSLADLQADSDAE 230
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVF VSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 231 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKW 347
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKW
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKW 117
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 149 bits (360), Expect = 8e-37
Identities = 71/99 (71%), Positives = 83/99 (83%)
Frame = +3
Query: 51 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFAVSLADLQADSDAE 230
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVF VSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 231 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKW 347
+++RK RL AEDVQGRNVL NF GM TTDKLR +VKKW
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKW 117
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 148 bits (359), Expect = 1e-36
Identities = 71/99 (71%), Positives = 81/99 (81%)
Frame = +3
Query: 51 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFAVSLADLQADSDAE 230
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVF VSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 231 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKW 347
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKW
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKW 117
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 76 GTMLKRRPCSPRDKWAPPLSIAP 144
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 SLRMSRDVMFSAISTAWTSPLISSDG 333
SL S D+ FS I +AW ++SDG
Sbjct: 409 SLESSLDIDFSTIPSAWNDDDVTSDG 434
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 SLRMSRDVMFSAISTAWTSPLISSDG 333
SL S D+ FS I +AW ++SDG
Sbjct: 466 SLESSLDIDFSTIPSAWNDDDVTSDG 491
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 329 SELISGEVHAVEIAENITSLDILSDKSELAER 234
+EL +G A +IA+NIT + D+S+LAE+
Sbjct: 390 NELHNGGQGADDIAKNITGIVKADDQSQLAEK 421
>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 132 VNRTQGTKIASEGLKGRVFAVSLADLQADSDAER 233
+ QG KI+++GL+ + +L L+ D D +R
Sbjct: 991 IRAAQGVKISAQGLEHAIAGTALYVLKPDDDLDR 1024
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 231 FPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 142
+P+ P D P++H PLD +Q + G
Sbjct: 386 YPYVSNPEDPNHEPRQHEPLDSDVQVIDEG 415
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 79 TMLKRRPCSPRDKWAPPLSIAPREQK 156
T+ KR+P RDK P++ AP +K
Sbjct: 163 TVAKRKPLQGRDKVGIPITPAPSNEK 188
>02_01_0455 +
3266123-3266258,3266348-3266670,3267083-3267661,
3267866-3268336
Length = 502
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 154 KLHLRV*RGVFLR-SPLLISRLIVMRKGLSASSDLSLRMSRDVMFSAISTAWTSPLISSD 330
+L L V GV + SPL IS + ++ + L ++ ++ ++++T WTS +
Sbjct: 141 RLLLGVGVGVCIHASPLYISEMAPAQQRGMLNILFQLMITVGILSASLTTYWTSKIAGGW 200
Query: 331 GW 336
GW
Sbjct: 201 GW 202
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 123 TTLVNRTQGTKIASEGLKGRVFAV 194
TT+VN + K+A EG+KG + V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>02_05_0952 + 33022742-33023125
Length = 127
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 179 PL*TLRCNFCSLGAIDKGGAHLSLGEH-GRR 90
P T RC +G + KG HLS+ GRR
Sbjct: 60 PQLTCRCRRRFMGGVGKGAPHLSMARRKGRR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,162,616
Number of Sequences: 37544
Number of extensions: 210690
Number of successful extensions: 556
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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