Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J20
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   0.44 
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    24   3.1  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    24   3.1  
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    23   7.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    22   9.5  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 77   IVNYNVVSNDTIRMQMQAMNQFGN 148
            I   NV+  + +R + +A+N FGN
Sbjct: 1446 IERINVIKEEVVRQEKEALNTFGN 1469


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 83  NYNVVSNDTIRMQMQAMNQFG 145
           NY+ + N + R ++  MN FG
Sbjct: 210 NYSSIFNQSFRTEISIMNDFG 230


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 156 PLLLPN*FMACICILIVSLETTL 88
           PL+ P+ F   +C+++  L+ TL
Sbjct: 195 PLITPSYFFTLLCLILPPLQITL 217


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 77  IVNYNVVSNDTIR 115
           +V YNV+SND +R
Sbjct: 71  LVTYNVLSNDELR 83


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 68  DKTKNQYIMCTVSRLLRTVRP 6
           DK K + + CT SRL    RP
Sbjct: 83  DKEKTRRMFCTPSRLNTAHRP 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,526
Number of Sequences: 5004
Number of extensions: 7050
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)