Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J19
(247 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 136 1e-33
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 136 1e-33
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 136 1e-33
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 136 1e-33
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 133 2e-32
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 73 3e-14
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 73 3e-14
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 68 8e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 35 0.009
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 35 0.009
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 35 0.009
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.012
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.027
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 33 0.027
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 33 0.027
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.062
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 0.082
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.082
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 30 0.19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 30 0.19
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 0.58
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 0.58
AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical ... 27 1.3
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 1.8
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 27 1.8
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 27 2.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 27 2.3
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z71178-4|CAA94877.1| 390|Caenorhabditis elegans Hypothetical pr... 26 4.1
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z99281-23|CAE18026.1| 302|Caenorhabditis elegans Hypothetical p... 25 9.4
Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z46267-7|CAA86429.2| 947|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr... 25 9.4
U80843-6|AAB37971.1| 345|Caenorhabditis elegans Skn-1 dependent... 25 9.4
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 136 bits (330), Expect = 1e-33
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = +2
Query: 50 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAGVL 229
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 230 DKLKAE 247
DKLKAE
Sbjct: 61 DKLKAE 66
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 136 bits (330), Expect = 1e-33
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = +2
Query: 50 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAGVL 229
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 230 DKLKAE 247
DKLKAE
Sbjct: 61 DKLKAE 66
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 136 bits (330), Expect = 1e-33
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = +2
Query: 50 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAGVL 229
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 230 DKLKAE 247
DKLKAE
Sbjct: 61 DKLKAE 66
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 136 bits (330), Expect = 1e-33
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = +2
Query: 50 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAGVL 229
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 230 DKLKAE 247
DKLKAE
Sbjct: 61 DKLKAE 66
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 133 bits (321), Expect = 2e-32
Identities = 62/64 (96%), Positives = 63/64 (98%)
Frame = +2
Query: 50 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAGVL 229
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 230 DKLK 241
DKLK
Sbjct: 61 DKLK 64
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 72.9 bits (171), Expect = 3e-14
Identities = 33/63 (52%), Positives = 45/63 (71%)
Frame = +2
Query: 59 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAGVLDKL 238
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YA VLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 239 KAE 247
+ E
Sbjct: 227 EEE 229
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 72.9 bits (171), Expect = 3e-14
Identities = 33/63 (52%), Positives = 45/63 (71%)
Frame = +2
Query: 59 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAGVLDKL 238
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YA VLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 239 KAE 247
+ E
Sbjct: 245 EEE 247
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 68.1 bits (159), Expect = 8e-13
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +2
Query: 53 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAGVLD 232
G K HIN+V +GHVD+GKST G L++ G +D+RT+EK+E+EA+E G+ S+ + +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 56 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDERTIEKFEKEAQEMGKG 205
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 97
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 56 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDERTIEKFEKEAQEMGKG 205
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 56 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDERTIEKFEKEAQEMGKG 205
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.012
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 74 NIVVIGHVDSGKSTTTGHLIYKCGGI 151
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.027
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 74 NIVVIGHVDSGKSTTTGHLIYKCGGID 154
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 33.1 bits (72), Expect = 0.027
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 8 GGYYTLI-VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 136
G +T + +IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 120 GSLFTEVWIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 33.1 bits (72), Expect = 0.027
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 8 GGYYTLI-VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 136
G +T + +IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 120 GSLFTEVWIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 31.9 bits (69), Expect = 0.062
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 74 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKG 205
N ++ HVD GKST L+ CG + + +K E +G
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERERG 87
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.082
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 74 NIVVIGHVDSGKSTTTGHLIYKCG 145
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.082
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 74 NIVVIGHVDSGKSTTTGHLIYKCG 145
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 0.19
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 62 KVHINIVVIGHVDSGKSTTT 121
K+++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 30.3 bits (65), Expect = 0.19
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 62 KVHINIVVIGHVDSGKSTTT 121
K+++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 0.58
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 71 INIVVIGHVDSGKSTTT 121
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 0.58
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 71 INIVVIGHVDSGKSTTT 121
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical
protein Y37H2A.6 protein.
Length = 410
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 32 IRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIE--KFEKEAQEMGK 202
IR+ K+GK K+ + ++ D GKS +L + C + + +E +F+ ++GK
Sbjct: 11 IREAWKLGKNKIFLRACILYEYDQGKSVYESYLSF-CDAVGDDFMEYREFDFWYYKLGK 68
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 44 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMGK 202
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 44 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMGK 202
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 44 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMGK 202
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 26 IVIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKC 142
+++R P+ ++ + + + V+G D GKST G L C
Sbjct: 155 VLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGC 192
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 152 DERTIEKFEKEAQEMGKGSFKYAGVLDKLKAE 247
++R ++ EKE + F Y LDK+K E
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKE 303
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 152 DERTIEKFEKEAQEMGKGSFKYAGVLDKLKAE 247
++R ++ EKE + F Y LDK+K E
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKE 238
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 102 PASPQQLVT*STNAVVSTNVPSKSS 176
P+SPQQL NA STNV + S
Sbjct: 120 PSSPQQLHLAFANATTSTNVTNAKS 144
>Z71178-4|CAA94877.1| 390|Caenorhabditis elegans Hypothetical
protein B0024.4 protein.
Length = 390
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 126 T*STNAVVSTNVPSKSSRRKPRKWVRVPSNTLGYWT 233
T N V S + S P KWV +P+N + W+
Sbjct: 278 TIGVNVVGSVPANANFSVTYPIKWVTIPTNIIQSWS 313
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 74 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAG 223
+I+ GH+D S GH +K GI E FE E ++ + + +G
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESG 1681
>Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical
protein F56H9.4 protein.
Length = 390
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 56 KEKVHINIVVIGHVDSGKSTTTGHL-IYKCGG 148
++K + +++IG +SGKST + I CGG
Sbjct: 40 RKKKALKLLIIGPGESGKSTIVKQVRILHCGG 71
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 53 GKEKVHINIVVIGHVDSGKSTTTGHL 130
G K +NIVV+G +SGK+T L
Sbjct: 12 GLGKKDVNIVVVGLDNSGKTTILNQL 37
>Z99281-23|CAE18026.1| 302|Caenorhabditis elegans Hypothetical
protein Y57G11C.43 protein.
Length = 302
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 77 IVVIGHVDSGKSTTTGHLIYK 139
I+V GH SGKST L K
Sbjct: 4 IIVTGHPSSGKSTVVDRLAKK 24
>Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical
protein F49E2.5c protein.
Length = 1030
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 108 SPQQLVT*STNAVVSTNVPSKSSRRK 185
SP Q T S N+V+ SKSS+RK
Sbjct: 493 SPSQHSTPSPNSVLLNGPQSKSSKRK 518
>Z46267-7|CAA86429.2| 947|Caenorhabditis elegans Hypothetical
protein F49E2.5b protein.
Length = 947
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 108 SPQQLVT*STNAVVSTNVPSKSSRRK 185
SP Q T S N+V+ SKSS+RK
Sbjct: 410 SPSQHSTPSPNSVLLNGPQSKSSKRK 435
>Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical
protein F49E2.5a protein.
Length = 1215
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 108 SPQQLVT*STNAVVSTNVPSKSSRRK 185
SP Q T S N+V+ SKSS+RK
Sbjct: 678 SPSQHSTPSPNSVLLNGPQSKSSKRK 703
>U80843-6|AAB37971.1| 345|Caenorhabditis elegans Skn-1 dependent
zygotic transcriptprotein 4 protein.
Length = 345
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 56 KEKVHINI-VVIGHVDSGKSTTTGHLIYKCGGI 151
+ K+H + ++G + GK+ HL KCG +
Sbjct: 132 RRKMHEALKYLLGKLFEGKTVKVNHLTIKCGNV 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,833,047
Number of Sequences: 27780
Number of extensions: 100106
Number of successful extensions: 382
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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