Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J18
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   1.0  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    23   4.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    23   4.2  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    23   4.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    23   7.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    23   7.4  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    22   9.7  
SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces ...    22   9.7  

>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 117 FIQLVYRTKDFYVIEANFPLR*FRNI 40
           FI L+     F+++  NFP+  F+NI
Sbjct: 71  FISLLNPLFTFFILNTNFPIPIFKNI 96


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 21  MQRGETRCCGITGEENSLRLHKNL 92
           + R E+ CC +    N  R+ KNL
Sbjct: 186 LTRNESTCCCVLCSGNMTRVRKNL 209


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 109 TRLSNQRFLCNRSEFSSPVIPQ 44
           T  +NQ+FL N+   S+P++P+
Sbjct: 405 TSPNNQQFLNNQQRESAPLLPR 426


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 121  VVHSTRLSNQRFLCNRSEFSSPVIPQHLV 35
            VVH      +  L  +SEF SP+  + LV
Sbjct: 1029 VVHPVLTLTREALLRQSEFFSPIFKRRLV 1057


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 28  EVKLDVAELPERKI 69
           E KL +AEL ERKI
Sbjct: 368 EAKLTIAELRERKI 381


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 79  NRSEFSSPVIPQHL 38
           NR   S+P +PQH+
Sbjct: 244 NRDSSSAPAVPQHM 257


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 46  AELPERKIRFDYIKIFGSINELNEL 120
           +E  ER ++    K+F S+N  N+L
Sbjct: 349 SETVERLVKEHVTKVFNSLNSKNKL 373


>SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 122

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 101 IEPKIFM*SKRIFLS 57
           +EPK+F  ++R FLS
Sbjct: 21  VEPKVFFANERTFLS 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,415
Number of Sequences: 5004
Number of extensions: 5450
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)