Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J18
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884...    26   3.7  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    26   3.7  
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20...    26   4.9  
08_02_0223 - 14452059-14452359,14452439-14452609,14452692-144532...    26   4.9  
05_04_0311 - 20120172-20122115                                         25   6.5  

>02_02_0451 +
          10387353-10387580,10387675-10387934,10388160-10388484,
          10388819-10389061
          Length = 351

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 10 REKECSEVKLDVAELPE 60
          REK+ S+VKL  AELPE
Sbjct: 30 REKDRSDVKLVAAELPE 46


>02_01_0689 +
           5137506-5137591,5138641-5138709,5139489-5139580,
           5139967-5140289,5141373-5142479,5142593-5143279,
           5144214-5144522,5145488-5145823,5146165-5146263,
           5146676-5146940,5146950-5147104,5147666-5149723,
           5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 112 STRLSNQRFLCNRSEFSS 59
           S   SN +FLCNR+EF S
Sbjct: 473 SRACSNYQFLCNRAEFVS 490


>10_01_0016 +
           190329-191210,206896-207033,208029-208103,208533-208639,
           209193-209250,210183-210242,210320-210394,210504-210641,
           211766-211820,212134-212256,212645-212883
          Length = 649

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 91  RFLCNRSEFSSPVIPQHLVSPRCILSPS 8
           R LC+R+E S P+ P + V+     SPS
Sbjct: 403 RDLCSRAEKSKPLSPVYKVTKTVYASPS 430


>08_02_0223 -
           14452059-14452359,14452439-14452609,14452692-14453299,
           14453393-14453524,14453606-14454067,14454146-14454979
          Length = 835

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 36  TRCCGITGEENSLRLHKNL 92
           + CCG+T  EN   LHK++
Sbjct: 89  SNCCGLTARENFGILHKDI 107


>05_04_0311 - 20120172-20122115
          Length = 647

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 1   VFTREKECSEVKLDVAELPE 60
           VF REKEC EV   + + PE
Sbjct: 163 VFGREKECGEVISRLVDCPE 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,770
Number of Sequences: 37544
Number of extensions: 31209
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 21
effective length of database: 14,004,924
effective search space used: 266093556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)