Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J18
         (124 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    25   9.8  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    25   9.8  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 115 HSTRLSNQRFLCNRSEFSSPVIPQHLVSPRCIL 17
           H ++  NQ    N+S      IPQ+L+ PRC+L
Sbjct: 152 HQSQNHNQHRNHNQSHSGPHHIPQNLMMPRCML 184


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 115 HSTRLSNQRFLCNRSEFSSPVIPQHLVSPRCIL 17
           H ++  NQ    N+S      IPQ+L+ PRC+L
Sbjct: 276 HQSQNHNQHRNHNQSHSGPHHIPQNLMMPRCML 308


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
            protein R11A8.7b protein.
          Length = 2584

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 1    VFTREKECSEVKLDVAELPERKIRFDYIKIF 93
            V  +E   S ++  V  L +++I+ DY+K+F
Sbjct: 1105 VVNKESGSSLLRRSVDNLTDKRIKEDYLKLF 1135


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 1    VFTREKECSEVKLDVAELPERKIRFDYIKIF 93
            V  +E   S ++  V  L +++I+ DY+K+F
Sbjct: 1105 VVNKESGSSLLRRSVDNLTDKRIKEDYLKLF 1135


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
            R11A8.7b protein.
          Length = 2584

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 1    VFTREKECSEVKLDVAELPERKIRFDYIKIF 93
            V  +E   S ++  V  L +++I+ DY+K+F
Sbjct: 1105 VVNKESGSSLLRRSVDNLTDKRIKEDYLKLF 1135


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 1    VFTREKECSEVKLDVAELPERKIRFDYIKIF 93
            V  +E   S ++  V  L +++I+ DY+K+F
Sbjct: 1105 VVNKESGSSLLRRSVDNLTDKRIKEDYLKLF 1135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,421
Number of Sequences: 27780
Number of extensions: 29067
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 21
effective length of database: 12,156,818
effective search space used: 230979542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)