Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J17
         (241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    26   0.58 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    23   4.1  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    23   4.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    23   7.1  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    23   7.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.1  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    23   7.1  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.1  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    23   7.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    22   9.4  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 73  RQPRADPRLTHHNQSGXXXXXXXXQTDDESSVLDSQDVSS 192
           +QP  +  LT  +++          ++  SSV DS D+SS
Sbjct: 245 QQPELNSLLTSQSKNSTPSESDSSSSESSSSVSDSSDLSS 284


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 47  RPFSTPAPVATPAP 6
           +P S P P+A PAP
Sbjct: 180 QPVSLPQPIAAPAP 193


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 57  GVAASVLDASAGGD 16
           G AAS+LD S GGD
Sbjct: 298 GDAASLLDGSVGGD 311


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 2   HEGRVSPPALASRTDAATPRTSTSD 76
           HEG V    LASR + A P     D
Sbjct: 252 HEGHVQISLLASRIERAEPTIMAFD 276


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 26  ALASRTDA--ATPRTSTSDSPAPTRASH 103
           AL S +D+  A P  + S  P+PT A H
Sbjct: 180 ALISISDSPLAAPSANASTRPSPTLAKH 207


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 44  PFSTPAPVATPAP 6
           P   PAPVA PAP
Sbjct: 893 PAPIPAPVAEPAP 905


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 23  PALASRTDAATPRTSTSDSPA 85
           PA    T  A P +STS +PA
Sbjct: 176 PAATGTTSNAPPASSTSTTPA 196


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 350

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 68 LRCAGWPRPFSTPAPVATPA 9
          +RC+   + F+ P+P A+P+
Sbjct: 31 IRCSSLHQTFTAPSPEASPS 50


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 59  AGWPRPFSTPAPV 21
           A W  PF TP P+
Sbjct: 258 ANWQNPFQTPEPL 270


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 20  PPALASRTDAATPRTSTSDSPAPT 91
           PP+  +   AA+P   TS SP P+
Sbjct: 473 PPSSINSNRAASPFRPTSVSPQPS 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.306    0.123    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,837
Number of Sequences: 5004
Number of extensions: 5273
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)