Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J17
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0527 + 18212938-18213257,18213352-18213991 30 0.23
07_01_0034 + 290094-290265,290378-290793 28 0.92
03_05_0565 + 25667391-25667696 28 1.2
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 27 1.6
09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902 27 2.1
07_03_0255 + 15866422-15866434,15867907-15868659,15868728-15868909 26 3.7
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 26 3.7
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 26 3.7
01_05_0418 + 21964094-21964482,21964558-21964681 26 3.7
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 26 4.9
03_04_0084 - 17153428-17153502,17154158-17154433 26 4.9
12_01_0767 - 6956758-6957138,6957491-6957581,6957796-6957861,695... 25 6.5
05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664 25 6.5
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 25 6.5
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 25 6.5
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 25 8.5
11_04_0353 + 16690594-16691502 25 8.5
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 25 8.5
07_03_1107 - 24024387-24024497,24025799-24026410 25 8.5
07_03_0859 + 22054087-22055421 25 8.5
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 25 8.5
05_01_0120 - 828834-831143 25 8.5
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 25 8.5
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 25 8.5
>08_02_0527 + 18212938-18213257,18213352-18213991
Length = 319
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 64 LNQRQPRADPRLTHHNQSGXXXXXXXXQTDDESSVLD 174
L + PR R TH N G +TDD++S+ D
Sbjct: 144 LGAKHPRGYYRCTHRNTQGCTATKQVQRTDDDASLFD 180
>07_01_0034 + 290094-290265,290378-290793
Length = 195
Score = 28.3 bits (60), Expect = 0.92
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 20 PPALASRTDAATPRTSTSDSPAPTRAS 100
PPA++S T+ TS + SPAP+ AS
Sbjct: 145 PPAVSSPTEEMPAVTSPTGSPAPSSAS 171
>03_05_0565 + 25667391-25667696
Length = 101
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 2 HEGRVSPPALASRTDAATPRTSTSDS 79
H R P LA R DAA+PR S S S
Sbjct: 48 HPPRHRSPPLARRADAASPRRSCSGS 73
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 17 SPPALASRTDAATPRTSTSDSPAP 88
+PPAL T A +P+ S+S P P
Sbjct: 289 TPPALPPATTAPSPKNSSSSPPPP 312
>09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902
Length = 361
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 49 GHPAHLNQRQPRADPRLTHHNQSGXXXXXXXXQTDDESSVLD 174
G L + PR R TH + G +TD++++V D
Sbjct: 135 GQKEILGAKHPRGYYRCTHRHSQGCMATKQVQRTDEDATVFD 176
>07_03_0255 + 15866422-15866434,15867907-15868659,15868728-15868909
Length = 315
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 84 AGLSLVEVRGVAASVLDASAGGDTRP 7
AG L + G AAS LD A G T P
Sbjct: 223 AGAGLKDSNGAAASALDQHATGATNP 248
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 11 RVSPPALASRTDAATPRTSTSDSPAPTRASH 103
R SPPA R+ A R+ SP T +SH
Sbjct: 239 RRSPPARRERSPAPRSRSPRRRSPVKTTSSH 269
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +2
Query: 56 PRTSTSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSPAP 196
P + S SPAPT+A+ CS+ TS AP
Sbjct: 35 PPAAASMSPAPTQAAADITPTPTTSILSTKASTPAGSCSSRSTSVAP 81
>01_05_0418 + 21964094-21964482,21964558-21964681
Length = 170
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 107 WCVRRG--SARGCRWLRCAGWPRPF 39
W RG AR CRWL+ W +P+
Sbjct: 112 WMAFRGWPRARLCRWLQSRCWRKPY 136
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 5 EGRVSPPALASRTD--AATPRTSTSDSPAPTRAS 100
+ R+ P L T AA+P + S SPAP RAS
Sbjct: 277 DARLVSPWLGGNTPRYAASPWDNVSPSPAPIRAS 310
>03_04_0084 - 17153428-17153502,17154158-17154433
Length = 116
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 50 PRPFSTPAPVATPAP 6
P+P + PAP A PAP
Sbjct: 24 PKPAAKPAPAAAPAP 38
>12_01_0767 -
6956758-6957138,6957491-6957581,6957796-6957861,
6958079-6958194
Length = 217
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 11 RVSPPALASRTDAATPRTSTSDSPAP 88
R+ LASRT AA +T+DSP P
Sbjct: 115 RLPDEELASRTPAAELPGTTADSPRP 140
>05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664
Length = 263
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 59 AGWPRPFSTPAPVATPAP 6
AG+P P S+P P+ P P
Sbjct: 186 AGFPPPVSSPNPLLVPVP 203
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 72 LVEVRGVAASVLDASAGGDTRPSC 1
L VR VAA AS D RPSC
Sbjct: 111 LGSVRNVAAVAARASESDDDRPSC 134
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 17 SPPALASRTDAATPRTSTSDSPAPTRASH 103
+PPA++S+ + +P STS P + H
Sbjct: 584 TPPAVSSQAELNSPVESTSHQSLPPKHQH 612
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 95 RGSARGCRWLRCAGWPRPFSTPAPVATPAP 6
+ +A G RWLR A RP S PA A P
Sbjct: 523 QAAAPGPRWLRLAATLRPIS-PATAAVRYP 551
>11_04_0353 + 16690594-16691502
Length = 302
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 17 SPPALASRTDAATPRTSTSDSPAPTRA 97
SPP LA+ DAA +T P +RA
Sbjct: 53 SPPGLAALADAAVRYATTPTVPQQSRA 79
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 104 CVRRGSARGCRWLRCAGWPRPF 39
C +A GCR+ + GW RPF
Sbjct: 25 CSSASTAAGCRFFQDGGW-RPF 45
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 17 SPPALASRTDAATPRTSTSDSPAPTRA 97
+PPA A T A +PAPT+A
Sbjct: 60 TPPAAAPTTPATPAPAEAPTTPAPTKA 86
>07_03_0859 + 22054087-22055421
Length = 444
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 104 CVRRGSARGCRWLRCAGWPRPFSTPAPVATPAP 6
C RR R + A P P + PAP TP P
Sbjct: 16 CFRRRRRRAAK--PNAATPSPAARPAPTPTPTP 46
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -3
Query: 50 PRP-FSTPAPVATPAPR 3
PRP S P PVA PAP+
Sbjct: 271 PRPPLSPPTPVAAPAPQ 287
>05_01_0120 - 828834-831143
Length = 769
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 92 GSARGCRWLRCAGWPRPFSTPAPVATPA 9
G G ++ R A W TP ATPA
Sbjct: 12 GGGAGKKFWRSASWSASRDTPPDAATPA 39
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 8 GRVSPPALASRTDAATPRTSTSDSPAPTRAS 100
G +SPPA++S A +P +++S SP P+ S
Sbjct: 219 GLLSPPAMSSA--ALSPMSTSSLSPLPSPMS 247
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 50 PRPFSTPAPVATPAP 6
P PFS P PV P P
Sbjct: 96 PYPFSVPVPVPVPIP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.306 0.123 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,219,455
Number of Sequences: 37544
Number of extensions: 70671
Number of successful extensions: 338
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
- SilkBase 1999-2023 -