Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J17
         (241 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical pr...    31   0.11 
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    27   1.3  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    26   4.1  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    26   4.1  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z68222-8|CAC70146.2|  613|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z68217-10|CAC70099.2|  613|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z68217-4|CAA92467.2|  499|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF273780-1|AAG15129.1|  509|Caenorhabditis elegans nuclear recep...    25   7.2  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    25   9.5  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    25   9.5  

>Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical
           protein M05B5.3 protein.
          Length = 403

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
 Frame = +2

Query: 20  PPALASRTDAATPRT---STSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSP 190
           PP+    T + TP T   STSD  APT AS                     P S A   P
Sbjct: 230 PPSTTPETSSTTPSTVTSSTSDPNAPT-ASDAASGTGTGTESSDTPASSAPPTSAASGPP 288

Query: 191 AP 196
           AP
Sbjct: 289 AP 290


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 11  RVSPPALASRTDAATPRTSTSDSPAPTRAS 100
           R SPP  ++ T    P +S+S +P P R S
Sbjct: 167 RYSPPPSSTPTPTPPPSSSSSPTPTPLRRS 196


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/62 (22%), Positives = 21/62 (33%)
 Frame = +2

Query: 17  SPPALASRTDAATPRTSTSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSPAP 196
           +P    S  +A  P  +  ++PAP   S                     P S A  + AP
Sbjct: 274 TPAPATSSEEAPAPAPTAEETPAPETVSAAPEAANSYDSAGGDAATAPAPSSEAADAAAP 333

Query: 197 TE 202
           T+
Sbjct: 334 TD 335



 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/60 (21%), Positives = 18/60 (30%)
 Frame = +2

Query: 17  SPPALASRTDAATPRTSTSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSPAP 196
           +P      T A  P    + +PAP  A +                    P   A  +PAP
Sbjct: 634 APAPAVEETPAPAPAAEETPAPAPAAAEYAAPVAEETPAPAPAAEETPAPAQAAEETPAP 693


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = +2

Query: 41  TDAATPRTSTSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSPAPT 199
           T+A+TP TSTS S   T  S                     P    RTS   T
Sbjct: 528 TEASTPTTSTSTS---TSTSTPSTTTSTTSTSTTSSTSSSAPIRAVRTSTPTT 577


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 20  PPALASRTDAATPRTSTSDSPAPTRASH 103
           PPA A+    +     T  SPAP R  H
Sbjct: 139 PPAAAAAAPISPKAAPTPQSPAPNRVPH 166


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  RGHPAHLNQRQPRADPRLTHHNQ 114
           +G P    Q+QP+   +LTH NQ
Sbjct: 168 QGQPQQAQQQQPQQGNQLTHMNQ 190


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 5   EGRVSPPALASRTDAATPRTSTSDSPAP 88
           E R +PP    +T   TP+    ++PAP
Sbjct: 323 ENRAAPPQTGRKTLMPTPQAPFQNAPAP 350


>Z68222-9|CAE46689.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 2   HEGRVSPPALASRTDAATPRTSTSDSPAPTRASH 103
           +EG  SP    + T  + P TSTS +P  +  S+
Sbjct: 237 NEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSY 270


>Z68222-8|CAC70146.2|  613|Caenorhabditis elegans Hypothetical
           protein F58G6.5b protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 2   HEGRVSPPALASRTDAATPRTSTSDSPAPTRASH 103
           +EG  SP    + T  + P TSTS +P  +  S+
Sbjct: 219 NEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSY 252


>Z68217-11|CAE46673.1|  631|Caenorhabditis elegans Hypothetical
           protein F58G6.5c protein.
          Length = 631

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 2   HEGRVSPPALASRTDAATPRTSTSDSPAPTRASH 103
           +EG  SP    + T  + P TSTS +P  +  S+
Sbjct: 237 NEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSY 270


>Z68217-10|CAC70099.2|  613|Caenorhabditis elegans Hypothetical
           protein F58G6.5b protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 2   HEGRVSPPALASRTDAATPRTSTSDSPAPTRASH 103
           +EG  SP    + T  + P TSTS +P  +  S+
Sbjct: 219 NEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSY 252


>Z68217-4|CAA92467.2|  499|Caenorhabditis elegans Hypothetical
           protein F58G6.5a protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 2   HEGRVSPPALASRTDAATPRTSTSDSPAPTRASH 103
           +EG  SP    + T  + P TSTS +P  +  S+
Sbjct: 105 NEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSY 138


>AF273780-1|AAG15129.1|  509|Caenorhabditis elegans nuclear receptor
           NHR-34 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 2   HEGRVSPPALASRTDAATPRTSTSDSPAPTRASH 103
           +EG  SP    + T  + P TSTS +P  +  S+
Sbjct: 115 NEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSY 148


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 50  PRPFSTPAPVATPAP 6
           PRP S P P+ +P P
Sbjct: 285 PRPTSVPPPIPSPGP 299


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 50  PRPFSTPAPVATPAP 6
           PRP S P P+ +P P
Sbjct: 285 PRPTSVPPPIPSPGP 299


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 17  SPPALASRTDAATPRTSTSDSPAPTR 94
           +PP+  S T   TP  ++S +P P++
Sbjct: 597 TPPSTTSPTTTVTPVATSSATPKPSK 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.306    0.123    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,924
Number of Sequences: 27780
Number of extensions: 40199
Number of successful extensions: 189
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)