Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J15
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   103   7e-24
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    99   1e-22
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   0.54 
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   3.8  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   3.8  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   5.0  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    25   5.0  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    24   6.7  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  103 bits (248), Expect = 7e-24
 Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
 Frame = +3

Query: 15  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 194
           MGIDI   H RK +R++  S++V               T+++FN+ IL+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 195 ISLFRLAR--HMKKPTREGLIAVVVGTVSNDVRRYTVPKMTVAALHVTGKARARILAAGG 368
           IS+ ++A     K  + EG   V+VGTV++D R  TVPK++VAAL  T  ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120

Query: 369 E 371
           E
Sbjct: 121 E 121


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =   99 bits (238), Expect = 1e-22
 Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
 Frame = +3

Query: 15  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 194
           MGIDI   H +K +R++  S++V               T+++FN+ IL+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 195 ISLFRLA--RHMKKPTREGLIAVVVGTVSNDVRRYTVPKMTVAALHVTGKARARILAAGG 368
           IS+ ++A     K  + +    VVVGTV++D R  TVPK+++AAL  T  ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120

Query: 369 E 371
           E
Sbjct: 121 E 121


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 0.54
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 185 PTSDFFVPFGTPHEEAYTRGFDRCSR 262
           P +D F+PF TP  +AY +   R  R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 71   LNFGAPNFPVVFMIDVDTHLD 9
            LN+ + + PV+  I +D+HLD
Sbjct: 1170 LNWDSVDVPVIIKISLDSHLD 1190


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +3

Query: 138 KFNQIILRRLFMSRINRPPISLFRLARHMKKPTREGLIAVVVGTVSNDVRRYTVPKMTVA 317
           + + I + RLF    N    SLF L+   KK  R  ++  V  +V      Y VP   V 
Sbjct: 142 RLHSIFILRLFNDGFNSLFSSLFILSSCKKKWVRASILLSVACSVKMSSLLY-VPAYLVL 200

Query: 318 ALHVTG 335
            L + G
Sbjct: 201 LLQILG 206


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 120 PSICTVLPIVSSTHPET*LRCAELSCRVYD 31
           P +CTVLPI+   +    +    + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 133 FVRLAKYLYSFTN 95
           F  LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 305 FRNSVSPHIIRDCANDYSDQTLACRLLHVACQTEQRNRRSVDTAHKQSP 159
           FRNSVS +I +  + +Y+D+ +   L     Q  +R  ++   A KQ P
Sbjct: 20  FRNSVSKNIAQLSSINYADRNVQAALE----QLSERKFKNEREARKQLP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,272
Number of Sequences: 5004
Number of extensions: 27537
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)