Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J15
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 101 1e-22
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 100 7e-22
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 98 2e-21
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 35 0.023
02_04_0332 + 22093387-22093550,22093753-22094056 31 0.38
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 27 4.7
02_03_0371 - 18267986-18268378 27 4.7
01_01_0512 + 3735005-3735580 27 4.7
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 27 6.2
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 27 6.2
10_01_0117 + 1447741-1449123 27 6.2
03_02_0041 + 5229308-5229575,5229974-5230140,5230694-5230906 26 8.2
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 101 bits (243), Expect = 1e-22
Identities = 59/120 (49%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +3
Query: 15 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 191
MGID + ++K +RT KS DV T + FN +ILRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 192 PISLFRLARHMKKPTREGLIAVVVGTVSNDVRRYTVPKMTVAALHVTGKARARILAAGGE 371
P+SL RL R M+ +E IAV+VGTV++D R Y VP M VAAL T ARARI+ GGE
Sbjct: 61 PLSLRRLVRFME--GKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 99.5 bits (237), Expect = 7e-22
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 7/126 (5%)
Frame = +3
Query: 15 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 191
MGID + ++K +RT +S+DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 192 PISLFRLARHM--KKPTREGL----IAVVVGTVSNDVRRYTVPKMTVAALHVTGKARARI 353
P+S+ RL R M K P R + IAV+VGTV++D R Y VP M VAAL T ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 354 LAAGGE 371
+ AGGE
Sbjct: 121 INAGGE 126
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 98.3 bits (234), Expect = 2e-21
Identities = 56/120 (46%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +3
Query: 15 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 191
MGID + ++K +RT +S DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 192 PISLFRLARHMKKPTREGLIAVVVGTVSNDVRRYTVPKMTVAALHVTGKARARILAAGGE 371
P+SL RLA+ M + E IAV+VGTV++D R +PKM V AL T ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFM-EGKEENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 34.7 bits (76), Expect = 0.023
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 320 CGYCHFRNS--VSPHIIRDCANDYSDQTLACRLLHVACQTEQRNRRSVDTAHKQSP 159
C Y H R S VS H ++C N++ C HV C+ ++ RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>02_04_0332 + 22093387-22093550,22093753-22094056
Length = 155
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 364 PAAKMRARAFPVTCSAATVILGTVYRLTSFETVPTTTAIKPS 239
PAA+M R+ P + A V L + R FET T KP+
Sbjct: 92 PAAEMACRSGPAEVAKAAVSLTRMNRSAEFETASTADDAKPT 133
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 231 PTREGLIAVVVGTVSN-DVRRYTVPKMTVAALHVTGKARARILAAGG 368
PT E + +V +SN D T+ KMTV + A R+L GG
Sbjct: 95 PT-ENICKIVKAIISNSDYLSMTMKKMTVIHISQVNAANERMLGGGG 140
>02_03_0371 - 18267986-18268378
Length = 130
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 6 RVKMGIDINHKHDRKVRRTEVKSQDV 83
R + G+++NH+ D ++R E +QDV
Sbjct: 41 RREHGVEVNHRGDEEIRVPEGPNQDV 66
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 167 VYEPYQPTSDFFVPFGTPHEEAYTRGFDRCSR 262
VYEP T F +G P A GF+RC R
Sbjct: 153 VYEPTSDTPSTFY-YGDPLPNAVWYGFNRCPR 183
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 311 CHFRNSVSPHIIRDCANDYSDQTLACRLLHVACQTEQRNRRSVDTA 174
C SVS ++D DY +A + + + +Q N+ ++DTA
Sbjct: 489 CVSSPSVSKSEVKDGDGDYQVTNMASKTSTLVIRKDQSNQAAIDTA 534
>10_08_0765 -
20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 263 NDYSDQTLACRLLHVACQTEQRNRRSVDTAH 171
N D+ LA ++H + EQRN+R +AH
Sbjct: 882 NALDDKNLAEIIMHATKEGEQRNQREQRSAH 912
>10_01_0117 + 1447741-1449123
Length = 460
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 240 EGLIAVVVGTVSNDVRRYTVPKMTVAALHVT---GKARARILAAG 365
+G+I V+V T+ + + VAA H+ G A AR+ AG
Sbjct: 266 DGIIEVLVNTIRDPISPQATKASLVAAYHLALADGHAAARLAEAG 310
>03_02_0041 + 5229308-5229575,5229974-5230140,5230694-5230906
Length = 215
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 313 TVILGTVYRLTSFETV 266
T++LG VYRL SFE V
Sbjct: 76 TLLLGRVYRLVSFEEV 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,322,049
Number of Sequences: 37544
Number of extensions: 189533
Number of successful extensions: 448
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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