Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J15
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical ... 124 2e-29
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 30 0.46
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 30 0.46
AL117193-9|CAB60302.2| 737|Caenorhabditis elegans Hypothetical ... 27 4.3
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z81048-1|CAB02839.1| 587|Caenorhabditis elegans Hypothetical pr... 26 9.9
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 26 9.9
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr... 26 9.9
AB033380-1|BAA92264.1| 587|Caenorhabditis elegans kinesin like ... 26 9.9
>AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical
protein Y45F10D.12 protein.
Length = 188
Score = 124 bits (300), Expect = 2e-29
Identities = 65/119 (54%), Positives = 78/119 (65%)
Frame = +3
Query: 15 MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 194
MGIDINHKHDR RRT KS++ T KFN I+L+RL MSR NR P
Sbjct: 1 MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60
Query: 195 ISLFRLARHMKKPTREGLIAVVVGTVSNDVRRYTVPKMTVAALHVTGKARARILAAGGE 371
+SL +LAR ++K E V + TV++D R YTVPK++VAALHVT ARARILAAGGE
Sbjct: 61 LSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGE 119
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 30.3 bits (65), Expect = 0.46
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -2
Query: 328 TCSAATVILGTVYRLTSFETVPTTTAIKPSRVGFFMWRAKRNKEI 194
T S +TV +G+ TS ++ TT+A KPS FM+ ++KEI
Sbjct: 615 TSSGSTVTVGSTEASTSGSSLATTSAPKPSVTCLFMYDT-QSKEI 658
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 30.3 bits (65), Expect = 0.46
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -2
Query: 328 TCSAATVILGTVYRLTSFETVPTTTAIKPSRVGFFMWRAKRNKEI 194
T S +TV +G+ TS ++ TT+A KPS FM+ ++KEI
Sbjct: 822 TSSGSTVTVGSTEASTSGSSLATTSAPKPSVTCLFMYDT-QSKEI 865
>AL117193-9|CAB60302.2| 737|Caenorhabditis elegans Hypothetical
protein Y105C5A.15 protein.
Length = 737
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 128 HECQVQPDHPTEIVYE 175
HECQVQ D PT ++ E
Sbjct: 575 HECQVQNDEPTALLRE 590
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 26.6 bits (56), Expect = 5.7
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +1
Query: 139 SSTRSSYGDCL*AVSTD 189
SSTR+S+GDC+ ++S++
Sbjct: 569 SSTRNSFGDCMWSISSE 585
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
R09H10.5 protein.
Length = 1603
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 297 QCIASHHSRLCQRLQRSNPRV*A-SSCGVPNG 205
QC A+H LCQ + +N V A C PNG
Sbjct: 1560 QCDANHFGNLCQLRKCTNGGVSAYGLCDCPNG 1591
>Z81048-1|CAB02839.1| 587|Caenorhabditis elegans Hypothetical
protein C41G7.2 protein.
Length = 587
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 317 GYCHFRNSVSPHIIRDCANDYSDQTLACRLLHVACQTEQRNRRSVDTAHK 168
G+ +R+S ++ DC S +T+ L+ + ++RS++ A K
Sbjct: 513 GHVSYRDSKLTQVLMDCLGRGSSKTMVVVNLNPCNEQATESKRSIEFASK 562
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical protein
C37C3.6c protein.
Length = 1487
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 143 QPDHPTEIVYEPYQPTSDFFVPFG 214
QP P+ IV P Q S VP+G
Sbjct: 1345 QPAQPSNIVSPPQQSASPVVVPYG 1368
>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
protein F09F7.3 protein.
Length = 1154
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 137 QVQPDHPTEIVYEPYQPTSDFFVPFGTPHEEAYTRGF 247
Q+ D P I+++ SDF + HEE Y F
Sbjct: 232 QLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAF 268
>AB033380-1|BAA92264.1| 587|Caenorhabditis elegans kinesin like
protein protein.
Length = 587
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 317 GYCHFRNSVSPHIIRDCANDYSDQTLACRLLHVACQTEQRNRRSVDTAHK 168
G+ +R+S ++ DC S +T+ L+ + ++RS++ A K
Sbjct: 513 GHVSYRDSKLTQVLMDCLGRGSSKTMVVVNLNPCNEQATESKRSIEFASK 562
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,567,694
Number of Sequences: 27780
Number of extensions: 161409
Number of successful extensions: 520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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