Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J14
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   0.79 
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    26   0.79 
SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr 3|||M...    24   2.4  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    23   5.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    23   7.3  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    23   7.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    23   7.3  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    23   7.3  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    23   7.3  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 32  LQAIERVTSKCLQRITLPQKVARYRYRCMRYYDVYVTKIFYPSNFYVRL 178
           L  + R+   CL       +V RY ++ M YYD+ +     P N++  L
Sbjct: 422 LDKLTRIFQLCLAIGYSHYEVPRYLFQAMHYYDILLAA--DPRNYHALL 468


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 68  QRITLPQKVARYRYRCMRYYDVYVTKIFYPSNFYVRLAIIDQN 196
           Q   + +K   ++Y C + +   V     P N Y RL +ID N
Sbjct: 307 QEAEIEEKRKAFKYECKKLWRKGVA--LRPPNIYQRLGLIDAN 347


>SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 124

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 47  RVTSKCLQRITLPQKVARYRYRCMRYYDVYVTKIFYPSNFYVRLAI 184
           RVTS  +   T+   +  +R+    Y+D      FYP   YV +A+
Sbjct: 57  RVTSWNVDLSTVESGIYTFRFETGAYFDSLGVTSFYP---YVEMAV 99


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 29  NLQAIERVTSKCLQRITLPQKVARYRYRCMRY 124
           NLQ ++   +   +RI +  K A+++Y C  Y
Sbjct: 126 NLQHLQEHYNITPERIAVLYKFAQFQYNCGNY 157


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 122 YYDVYVTKIFYPSNFYVRLAIIDQN 196
           YY +YV  +F+  +  V + I D+N
Sbjct: 248 YYLLYVLFVFFSGSSGVSVVITDEN 272


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 5/17 (29%), Positives = 14/17 (82%)
 Frame = +3

Query: 150 FIHPIFMSVSQSSIRMI 200
           F+HP+++S  +S++ ++
Sbjct: 16  FVHPVYISSGESALEVV 32


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 167 KNWMDKIF*LRKRHSNACNGIYNEQPFA 84
           K W++KI   +KRHS   N I N  PFA
Sbjct: 844 KLWVEKINVAKKRHSQKIN-IKN--PFA 868


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 181 CETDIKIGWIKYFSYVNVIVTHATV 107
           C+T+++ GW    +Y N +V+  TV
Sbjct: 315 CKTELEGGWGITRAYFNSLVSKETV 339


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 49  SFNRLKVLHVYHC 11
           SFNR+K L  Y+C
Sbjct: 78  SFNRIKYLREYNC 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,856
Number of Sequences: 5004
Number of extensions: 11476
Number of successful extensions: 37
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)