Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J14
         (200 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110...    27   2.8  
03_06_0432 + 33879916-33880348,33881620-33881936,33882195-338822...    26   4.8  
05_05_0210 - 23285241-23285338,23286297-23286447,23286660-232867...    25   8.4  
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    25   8.4  
01_06_0121 + 26646288-26647025,26648466-26648494,26649387-266494...    25   8.4  

>08_01_0139 +
           1105857-1107008,1107124-1107328,1107583-1107768,
           1107924-1108133,1108552-1109186
          Length = 795

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -2

Query: 199 IILIDDCETDIKIGWIKYFSYVNVIVTHATVSITSNLLRKSDSLQTF*CYSFNRLKV 29
           ++++DDC+   K GW   +S +  I   +   + ++ + K  S     C S+   KV
Sbjct: 267 VLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKV 323


>03_06_0432 +
           33879916-33880348,33881620-33881936,33882195-33882281,
           33882690-33883253
          Length = 466

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 124 VTHATVSITSNLLRKSDSLQTF*CYSFNRLKVLHVYH 14
           +  A  +I+ + +R +D L +  CY  N ++V  +YH
Sbjct: 91  IPDAWTTISMSHMRVNDGLDSHWCYDCNYVQVGQMYH 127


>05_05_0210 -
           23285241-23285338,23286297-23286447,23286660-23286748,
           23287108-23288394,23288460-23288516,23289446-23289644,
           23290240-23290342,23291048-23291229,23291850-23291899,
           23292192-23292360
          Length = 794

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 74  ITLPQKVARYRYRCMRYYDVYVTKIFY 154
           I + +K+A+  YRC R++   + ++ Y
Sbjct: 468 IQMYRKIAKAEYRCPRHFSAELKELLY 494


>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
            87962-88042,88133-88237,88338-88568,88665-90197,
            90660-90752,91477-92887,93184-93305,93479-93718,
            94521-94682,94770-94937,95025-95141,95266-95376,
            95919-96506
          Length = 1787

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +2

Query: 5    EGTVINV*NLQAIERVTSKCLQRITLPQKVARYRYRCMRYYDVYVTKIFYP 157
            E T++N+ NL+    +      +  + ++V  +R    + +D+   KIF P
Sbjct: 1589 ENTIVNIYNLEEYVTLVVDATVKSGIMRQVEAFRSGFNQVFDISSLKIFSP 1639


>01_06_0121 +
           26646288-26647025,26648466-26648494,26649387-26649434,
           26650398-26650558,26650945-26651268,26651703-26651854
          Length = 483

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   ARGDSDKRVKPSSD*KSNIKMSAK 72
           A  D+ KRV+P+SD  S+   SAK
Sbjct: 38  AEDDAAKRVRPASDSSSDSSESAK 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,687,377
Number of Sequences: 37544
Number of extensions: 65493
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)