Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J14
         (200 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204190-1|AAO39194.1|  382|Caenorhabditis elegans nuclear recep...    27   1.4  
AF022978-5|AAG24181.2|  382|Caenorhabditis elegans Nuclear hormo...    27   1.4  
AL022289-3|CAA18371.1|  519|Caenorhabditis elegans Hypothetical ...    26   4.2  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    25   5.6  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    25   5.6  
AF016683-10|AAB66198.1|  405|Caenorhabditis elegans Hypothetical...    25   9.8  

>AY204190-1|AAO39194.1|  382|Caenorhabditis elegans nuclear receptor
           NHR-106 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 59  KCLQRITLPQKVARYRYRCMRYYDVYVTKIFYPSNF 166
           KC+Q I    +  R R    R +D+Y+T    P  F
Sbjct: 342 KCVQEIQKSIRTTRERTTIARTFDIYITDFSNPEMF 377


>AF022978-5|AAG24181.2|  382|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 106 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 59  KCLQRITLPQKVARYRYRCMRYYDVYVTKIFYPSNF 166
           KC+Q I    +  R R    R +D+Y+T    P  F
Sbjct: 342 KCVQEIQKSIRTTRERTTIARTFDIYITDFSNPEMF 377


>AL022289-3|CAA18371.1|  519|Caenorhabditis elegans Hypothetical
           protein ZK1225.4 protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 193 LIDDCETDIKIGWIKYFSYVNVIVTHAT 110
           +I  C T  +IG IKY+S +N   T+ T
Sbjct: 490 MILQCPTVARIGEIKYYSSLNKPTTNTT 517


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 190 IDDCETDIKIGWIKYFSYVNVIVTHATVSITSNLLRKSDSLQTF*CYSFNRLKVLHV 20
           I +CE  +  GW+K    +   +T  T+ I++  L K D  +   C SF  L  L +
Sbjct: 324 IRECEAQLTPGWVKQIGIMLSSLT--TLEISNKPLSKEDFSEL--CDSFPNLVQLDI 376


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 57   QNVCKESLFRKRLLVIDTVACVTMTF 134
            +N+CK  +F    LV+  V+CV   +
Sbjct: 1616 ENLCKVIMFNGMALVVSAVSCVASIY 1641


>AF016683-10|AAB66198.1|  405|Caenorhabditis elegans Hypothetical
           protein K09F6.8 protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +2

Query: 32  LQAIERVTSKCLQRITLPQKVARYRYRCMRYYDVYVTKIFYPSNFYVRLAI 184
           ++ I+    K  +     ++   ++   +R+Y    T I  P +FY+RL +
Sbjct: 127 IEKIQDAEEKAREWNRFKRRTVMHQINTLRFYAPRGTVIQIPISFYIRLTV 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,304,272
Number of Sequences: 27780
Number of extensions: 65849
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)