Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J13
(277 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 2.0
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 2.6
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 24 3.5
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 24 3.5
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 24 4.6
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 24 4.6
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 24 4.6
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 23 6.1
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 23 6.1
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 23 6.1
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 23 8.0
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 23 8.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 23 8.0
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 23 8.0
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 23 8.0
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 2.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 37 AVLSTVLGAKDPDQVASMAKQA 102
A++ +LG DPD V+ +AK++
Sbjct: 313 ALMVNILGTDDPDYVSKIAKRS 334
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.6 bits (51), Expect = 2.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 88 MAKQAGEFINIFMNLLDALKTSFSHRSLAARSMGRQDSVFYAAIAGLVMS 237
+AKQA +F+N+ +L +A SF + G+ + +F LV++
Sbjct: 543 LAKQASKFLNLAQSLRNAGILSFPESEYENINHGKAELLFETGRHDLVVT 592
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.2 bits (50), Expect = 3.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 40 VLSTVLGAKDPDQVASMAKQAGEFIN 117
V +T+LGA P+Q+ K A EFI+
Sbjct: 295 VSTTILGASKPEQIVENVK-AVEFID 319
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 24.2 bits (50), Expect = 3.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 142 LKTSFSHRSLAARSMGRQDSVFYAAIAGL 228
+K++FS ++ + ++GR S FY AI GL
Sbjct: 52 VKSAFSDDTVES-AVGRSGSAFYNAILGL 79
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 23.8 bits (49), Expect = 4.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 162 MRKRSLQCIQEIHKDVYELSSL 97
+RK S++ I+E HK++Y S++
Sbjct: 191 LRKLSIEKIREYHKEMYVPSNI 212
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 23.8 bits (49), Expect = 4.6
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Frame = +2
Query: 14 LQCRVFWL-----------RFCRRCSVQKIPTRSLPWQS 97
++CR FWL + CR C + + T+ L W +
Sbjct: 393 VRCRTFWLPDTFGYSSQIPQICRLCGMDRFLTQKLSWNN 431
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 23.8 bits (49), Expect = 4.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 152 EVFSASRRFIKMFMNSPACFAMEATWSG 69
E A+ R K++ N C A ++W G
Sbjct: 120 EANEAALRMAKVYTNKYECVAFSSSWHG 147
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 43 LSTVLGAKDPDQVASMAKQAGEFINIFMNLL 135
+S +LG PD A + K + +++F L
Sbjct: 60 MSAILGHSHPDITACIEKNLPKLVHLFSGFL 90
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 167 DLCENEVFSASRRF 126
D+CE+E F SR+F
Sbjct: 184 DVCEDEAFRGSRQF 197
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 106 LQPALPWKRPGRDLLHRAPSTE 41
LQP++ K+P +DL PS E
Sbjct: 481 LQPSVKEKKPTKDLQSPLPSVE 502
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 120 DVYELSSLLCHGSDLVGIFCT 58
+VYEL + L H D+ FCT
Sbjct: 89 NVYELFTYLNHFYDVFATFCT 109
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 23.0 bits (47), Expect = 8.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 23 RVFWLRFCRRCSVQKI 70
R+ + +FC+R S+QK+
Sbjct: 261 RLLYFQFCQRSSIQKM 276
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 67 LLHRAPSTEPQPKYPALEH 11
+L R PS P+P+ A++H
Sbjct: 389 ILQRPPSIVPRPETAAIQH 407
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 64 KDPDQVASMAKQAGEFINIFMNLLDALKTSFS 159
++ ++ A Q G INI LLDA S S
Sbjct: 892 EEREEARPKADQYGSLINIVSRLLDASNRSTS 923
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 23.0 bits (47), Expect = 8.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +3
Query: 102 WRVHKHLYESP 134
W +HKHL+ P
Sbjct: 46 WNIHKHLHRPP 56
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 23.0 bits (47), Expect = 8.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 106 LQPALPWKRPGRDL 65
+ P L W+ PGRD+
Sbjct: 133 VSPPLKWESPGRDI 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,249,197
Number of Sequences: 5004
Number of extensions: 23252
Number of successful extensions: 66
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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