Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J13
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0178 + 27239603-27239789,27240507-27240572,27240668-27240978 38 9e-04
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 29 0.53
02_04_0303 + 21842267-21842443,21842705-21842983 28 0.93
03_05_0340 + 23294044-23294166,23294395-23294640,23294907-232949... 27 2.1
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830... 27 2.1
04_04_1194 - 31643422-31643511,31643695-31643805,31643892-316444... 27 2.8
04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260 26 3.7
04_01_0109 + 1120981-1121249,1121326-1121536,1121683-1121880 26 3.7
03_01_0051 + 445035-445303,445380-445590,445737-445930,446151-44... 26 3.7
02_04_0102 + 19743276-19743420,19743500-19743966 26 3.7
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149... 26 3.7
05_06_0231 - 26587900-26587980,26588291-26588356,26588452-265885... 26 5.0
02_05_0537 - 29836846-29837220 26 5.0
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 25 6.5
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 25 6.5
07_03_0658 - 20366559-20367562,20367745-20367937 25 6.5
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 25 6.5
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 25 6.5
04_04_0316 - 24338774-24339367 25 6.5
03_05_0051 - 20288456-20291728 25 6.5
05_06_0153 - 26019377-26020813 25 8.7
01_01_0670 - 5131007-5131873 25 8.7
>01_06_0178 + 27239603-27239789,27240507-27240572,27240668-27240978
Length = 187
Score = 38.3 bits (85), Expect = 9e-04
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +1
Query: 19 MQGILAAVLSTVLGAKDPDQVASMAKQAGEFINIFMNLLDALKTSFSHRSLAARSMGRQD 198
+Q + LS V+G +D + + K+ E + +L + + + ++L + GR D
Sbjct: 96 VQTTIREQLSAVIGDRDGEYTLPLGKKLKEGLKKLNSLTVSQRRNIKRQALLTKVSGRND 155
Query: 199 SVFYAAIAGLVMSKP 243
SVF+A + V+ P
Sbjct: 156 SVFFATVGAFVLVPP 170
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 29.1 bits (62), Expect = 0.53
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +3
Query: 9 RCSNAGYFGCGSVDGARCKRSRPGRFHGKAGWRVHKHLYESPGCTEDFVFA*IARRAIDG 188
RCS G CG+ + +R G+ A + +H + PG ++ + A R G
Sbjct: 170 RCSTTGSITCGANGVGSRRATRAGKGGAAAAAQREQHACQPPGGGAVYMSSRCATRV--G 227
Query: 189 SPGLCFLRSHRRFSYVEA 242
+ G FL + RR + A
Sbjct: 228 AGGSWFLATPRRQPFSHA 245
>02_04_0303 + 21842267-21842443,21842705-21842983
Length = 151
Score = 28.3 bits (60), Expect = 0.93
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 213 CVKNRVLATHRSRGERSMRKRSLQCIQEIHKDVYELSSLLCHGSDLVG 70
C +A S R+ R+R LQC E+ K+ + + HG D +G
Sbjct: 32 CACGHAVAVQTSNTPRNPRRRWLQCPGELSKEYIRVQ--VTHGIDEIG 77
>03_05_0340 +
23294044-23294166,23294395-23294640,23294907-23294945,
23295439-23295805,23295904-23296136,23296496-23296756
Length = 422
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -3
Query: 275 LSLFV-TKDLR*GFDITKPAMAA*KTESW--RPIDRAASDLCENEVFSASRRFIK 120
+ +FV TKD R F T + SW +DRA S L +V SAS IK
Sbjct: 198 ICVFVPTKDARRNFTFTVHLLRVAAAYSWGGTGVDRAGSSLGRTDVKSASEISIK 252
>03_05_0042 +
20180151-20180468,20181595-20181665,20182929-20183087,
20183598-20183664,20183913-20184008,20184687-20184733,
20185113-20185193,20185704-20185806,20185967-20186028,
20187188-20187302,20193191-20195087,20195206-20195492
Length = 1100
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 135 QEIHKDVYELSSLLC-HGSDLVGIFCTEHRRQNR 37
Q+I + LS +LC +LVG+ C EH R +R
Sbjct: 451 QDIAESAELLSFILCLRACELVGMRCIEHYRPHR 484
>04_04_1194 -
31643422-31643511,31643695-31643805,31643892-31644406,
31644456-31644756
Length = 338
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +1
Query: 43 LSTVLGAKDPDQVASMAKQAGEFINIFMNLLDALKTSFSHRSL 171
++ + +KDPD++ + A+Q E+++I + A + HR +
Sbjct: 268 VAMAIESKDPDKITTQAEQLDEYVDIGDEMPTATLSLNIHRPI 310
>04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260
Length = 456
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +1
Query: 43 LSTVLGAKDPDQVASMAKQAGEFINI 120
++ + +KDPD++ + A+Q E+++I
Sbjct: 383 VTMAIESKDPDKITTQAEQLDEYVDI 408
>04_01_0109 + 1120981-1121249,1121326-1121536,1121683-1121880
Length = 225
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 1 FRHDAPMQGILAAVLSTVLGAKDPDQVASMAKQAGEFINIFMNLLDALKTSFSHRSLAAR 180
F +DAP+ G L A D + + G F+N L+ + T+F+H A
Sbjct: 28 FNYDAPLHGASRPKSVAKLTAGDTEASDKALVERGFFVNRSRVLVGSGTTTFNHAKSALL 87
Query: 181 S 183
S
Sbjct: 88 S 88
>03_01_0051 +
445035-445303,445380-445590,445737-445930,446151-446228,
447049-447141,448495-448525,448729-449058
Length = 401
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 1 FRHDAPMQGILAAVLSTVLGAKDPDQVASMAKQAGEFINIFMNLLDALKTSFSHRSLAAR 180
F +DAP+ G L A D + + G F+N L+ + T+F+H A
Sbjct: 28 FNYDAPLHGASRPKSVAKLTAGDTEASDKALVERGFFVNRSRVLVGSGTTTFNHAKSALL 87
Query: 181 S 183
S
Sbjct: 88 S 88
>02_04_0102 + 19743276-19743420,19743500-19743966
Length = 203
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 254 DLR*GFDITKPAMAA*KTESWRPIDRAAS 168
D R GFD+ PA +SWR R A+
Sbjct: 72 DERGGFDVAVPAAGGDDVDSWRSHPRCAA 100
>01_05_0752 -
24909954-24910502,24914620-24914786,24914916-24914979,
24915472-24915597,24915673-24915943,24916032-24916287,
24916386-24916754,24916850-24916891,24917474-24917682,
24918074-24918109,24918509-24918918,24919314-24919438,
24920267-24920333,24921596-24921652
Length = 915
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 30 FGCGSVDGARCKRSRPGRFHGKAGWRVHKHLYESPG 137
F G+ DG R G G W++ ++L ++PG
Sbjct: 595 FAAGTTDGPGAFDFRQGDVKGNPFWKLVRNLLKTPG 630
>05_06_0231 -
26587900-26587980,26588291-26588356,26588452-26588597,
26589182-26589374,26589465-26589515,26590165-26590311,
26590365-26590463,26590557-26590760,26590839-26590887,
26590979-26591074,26591367-26591457,26591753-26591823,
26592170-26592222,26592740-26592828,26593322-26593517,
26593975-26594088,26594217-26594291
Length = 606
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 94 KQAGEFINIFMNLLDALKTSFSHRSLAARSMGR 192
++ ++ N+ DALK +FS + L+ MG+
Sbjct: 314 QKVASLFDVIHNISDALKVAFSEQPLSMELMGQ 346
>02_05_0537 - 29836846-29837220
Length = 124
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 76 GRDLLHRAPSTEPQPKYPALE 14
GR LLHRAPS P+ LE
Sbjct: 39 GRFLLHRAPSAASPPRSRELE 59
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 51 GARCKRSRPGRFHGKAGWRVHKHLYESPGCTEDFV 155
G R +R R GRF W+V L+ G ++V
Sbjct: 123 GRRRRRRRRGRFLYSPYWKVDTRLFTFSGSVTNYV 157
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 105 RVHKHLYESPGCTEDFVFA*IARRAIDGSPGLCFLR 212
R L E+ G TED + + I + + G PGL LR
Sbjct: 215 RAFGDLIEASGITEDMIASLILLKDVRGVPGLPPLR 250
>07_03_0658 - 20366559-20367562,20367745-20367937
Length = 398
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1
Query: 88 WKRPGRDLLHRAPSTEPQPKYPALEHR 8
W RP D+ H +T + P +HR
Sbjct: 122 WGRPAADITHLVVATNAGAQAPGADHR 148
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 91 PWKRPGRDLLHRAPSTEPQPKYPALEH 11
P ++P H PS P P +PA H
Sbjct: 61 PHQQPPHFAAHAMPSPSPPPPHPAYMH 87
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 103 QPALPWKRPGRDLLHRAPSTEPQPKYPALEHR 8
Q +LP P D+ P+ PQP P E R
Sbjct: 99 QDSLPTSSPQPDVRDSQPALSPQPDEPRPEKR 130
>04_04_0316 - 24338774-24339367
Length = 197
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 153 RSLQCIQEIHKDV-YELSSLLCHGSDLVGIFCTEHRRQNRSQNTLHWSIVPK 1
R+L C HKD Y + L G+ C E R++ RS L W P+
Sbjct: 61 RTLSCGHVFHKDCDYSVDKWLREH----GLSCPECRKKARSVRVLPWRARPQ 108
>03_05_0051 - 20288456-20291728
Length = 1090
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 97 ALPWKRPGRDLLHRAPSTEPQPKYPALEHRAE 2
+LPW R RD+++ A + +Y L H+ +
Sbjct: 66 SLPWMRELRDVMYHAEDLLDKLEYNRLHHQMQ 97
>05_06_0153 - 26019377-26020813
Length = 478
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 174 GERSMRKRSLQCIQEIHKDVYELSSLLCHGSDLVGIFCTEHRRQ 43
GER R +C+ + + LC GS +G TE R+
Sbjct: 256 GERGERPERHECLAWLDRQPDRTVVFLCFGSTGIGNHSTEQLRE 299
>01_01_0670 - 5131007-5131873
Length = 288
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 1 FRHDAPMQGILAAVLSTVLGAKDPDQVASMAKQAGEF 111
F HDA ++ A +S DP A+ K++GEF
Sbjct: 158 FVHDAGNITVIKATVSASALGVDPTTAATDIKKSGEF 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,874,315
Number of Sequences: 37544
Number of extensions: 181458
Number of successful extensions: 614
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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