Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J13
(277 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z15009-1|CAA78729.1| 1111|Homo sapiens Laminin protein. 33 0.21
Z15008-1|CAA78728.1| 1193|Homo sapiens Laminin protein. 33 0.21
X73902-1|CAA52108.1| 1193|Homo sapiens nicein protein. 33 0.21
U31201-1|AAC50457.1| 1193|Homo sapiens laminin gamma2 chain prot... 33 0.21
U31200-1|AAC50456.1| 1111|Homo sapiens alternatively spliced lam... 33 0.21
BC113378-1|AAI13379.1| 1111|Homo sapiens laminin, gamma 2 protein. 33 0.21
BC112286-1|AAI12287.1| 1111|Homo sapiens laminin, gamma 2 protein. 33 0.21
AL354953-2|CAH70980.1| 1193|Homo sapiens laminin, gamma 2 protein. 33 0.21
U10860-1|AAA60331.1| 693|Homo sapiens guanosine 5'-monophosphat... 28 4.6
BC012178-1|AAH12178.1| 693|Homo sapiens guanine monphosphate sy... 28 4.6
AK223399-1|BAD97119.1| 693|Homo sapiens guanine monophosphate s... 28 4.6
AF297747-1|AAG53900.1| 551|Homo sapiens MLL/GMPS fusion protein... 28 4.6
X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane h... 27 8.0
S76436-1|AAB21121.2| 507|Homo sapiens heparan sulfate proteogly... 27 8.0
M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteogly... 27 8.0
M64283-1|AAA52699.1| 453|Homo sapiens heparan sulfate proteogly... 27 8.0
AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteog... 27 8.0
AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteog... 27 8.0
AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteog... 27 8.0
AK124863-1|BAC85971.1| 246|Homo sapiens protein ( Homo sapiens ... 27 8.0
>Z15009-1|CAA78729.1| 1111|Homo sapiens Laminin protein.
Length = 1111
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGCG-SVDGARCKRSRPGRFH 89
SARC N+G C V GARC R PG FH
Sbjct: 93 SARCDNSGRCSCKPGVTGARCDRCLPG-FH 121
>Z15008-1|CAA78728.1| 1193|Homo sapiens Laminin protein.
Length = 1193
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGCG-SVDGARCKRSRPGRFH 89
SARC N+G C V GARC R PG FH
Sbjct: 93 SARCDNSGRCSCKPGVTGARCDRCLPG-FH 121
>X73902-1|CAA52108.1| 1193|Homo sapiens nicein protein.
Length = 1193
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGCG-SVDGARCKRSRPGRFH 89
SARC N+G C V GARC R PG FH
Sbjct: 93 SARCDNSGRCSCKPGVTGARCDRCLPG-FH 121
>U31201-1|AAC50457.1| 1193|Homo sapiens laminin gamma2 chain
protein.
Length = 1193
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGCG-SVDGARCKRSRPGRFH 89
SARC N+G C V GARC R PG FH
Sbjct: 93 SARCDNSGRCSCKPGVTGARCDRCLPG-FH 121
>U31200-1|AAC50456.1| 1111|Homo sapiens alternatively spliced
laminin gamma2 chain protein.
Length = 1111
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGCG-SVDGARCKRSRPGRFH 89
SARC N+G C V GARC R PG FH
Sbjct: 93 SARCDNSGRCSCKPGVTGARCDRCLPG-FH 121
>BC113378-1|AAI13379.1| 1111|Homo sapiens laminin, gamma 2 protein.
Length = 1111
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGCG-SVDGARCKRSRPGRFH 89
SARC N+G C V GARC R PG FH
Sbjct: 93 SARCDNSGRCSCKPGVTGARCDRCLPG-FH 121
>BC112286-1|AAI12287.1| 1111|Homo sapiens laminin, gamma 2 protein.
Length = 1111
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGCG-SVDGARCKRSRPGRFH 89
SARC N+G C V GARC R PG FH
Sbjct: 93 SARCDNSGRCSCKPGVTGARCDRCLPG-FH 121
>AL354953-2|CAH70980.1| 1193|Homo sapiens laminin, gamma 2 protein.
Length = 1193
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGCG-SVDGARCKRSRPGRFH 89
SARC N+G C V GARC R PG FH
Sbjct: 93 SARCDNSGRCSCKPGVTGARCDRCLPG-FH 121
>U10860-1|AAA60331.1| 693|Homo sapiens guanosine 5'-monophosphate
synthetase protein.
Length = 693
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 252 PQVGLRHN*TGDGCVKNRVLATHRSRGERSMRKRSLQCIQEIHKDVYELSSLLCHGSDLV 73
P+VGL N G +KN + G +++ R L+CI+EI + V L+ +
Sbjct: 191 PEVGLTEN--GKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVLVLLSGGVD 248
Query: 72 GIFCTE--HRRQNRSQ 31
CT +R N+ Q
Sbjct: 249 STVCTALLNRALNQEQ 264
>BC012178-1|AAH12178.1| 693|Homo sapiens guanine monphosphate
synthetase protein.
Length = 693
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 252 PQVGLRHN*TGDGCVKNRVLATHRSRGERSMRKRSLQCIQEIHKDVYELSSLLCHGSDLV 73
P+VGL N G +KN + G +++ R L+CI+EI + V L+ +
Sbjct: 191 PEVGLTEN--GKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVLVLLSGGVD 248
Query: 72 GIFCTE--HRRQNRSQ 31
CT +R N+ Q
Sbjct: 249 STVCTALLNRALNQEQ 264
>AK223399-1|BAD97119.1| 693|Homo sapiens guanine monophosphate
synthetase variant protein.
Length = 693
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 252 PQVGLRHN*TGDGCVKNRVLATHRSRGERSMRKRSLQCIQEIHKDVYELSSLLCHGSDLV 73
P+VGL N G +KN + G +++ R L+CI+EI + V L+ +
Sbjct: 191 PEVGLTEN--GKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVLVLLSGGVD 248
Query: 72 GIFCTE--HRRQNRSQ 31
CT +R N+ Q
Sbjct: 249 STVCTALLNRALNQEQ 264
>AF297747-1|AAG53900.1| 551|Homo sapiens MLL/GMPS fusion protein
protein.
Length = 551
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 252 PQVGLRHN*TGDGCVKNRVLATHRSRGERSMRKRSLQCIQEIHKDVYELSSLLCHGSDLV 73
P+VGL N G +KN + G +++ R L+CI+EI + V L+ +
Sbjct: 324 PEVGLTEN--GKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVLVLLSGGVD 381
Query: 72 GIFCTE--HRRQNRSQ 31
CT +R N+ Q
Sbjct: 382 STVCTALLNRALNQEQ 397
>X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane
heparan sulfate proteoglycan core protein protein.
Length = 4393
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGC-GSVDGARCKRSRPGRFH 89
S++C AG C V+G C RP FH
Sbjct: 1286 SSQCDAAGQCQCKAQVEGLTCSHCRPHHFH 1315
>S76436-1|AAB21121.2| 507|Homo sapiens heparan sulfate proteoglycan
core protein protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGC-GSVDGARCKRSRPGRFH 89
S++C AG C V+G C RP FH
Sbjct: 395 SSQCDAAGQCQCKAQVEGLTCSHCRPHHFH 424
>M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteoglycan
protein.
Length = 4391
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGC-GSVDGARCKRSRPGRFH 89
S++C AG C V+G C RP FH
Sbjct: 1284 SSQCDAAGQCQCKAQVEGLTCSHCRPHHFH 1313
>M64283-1|AAA52699.1| 453|Homo sapiens heparan sulfate proteoglycan
protein.
Length = 453
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGC-GSVDGARCKRSRPGRFH 89
S++C AG C V+G C RP FH
Sbjct: 267 SSQCDAAGQCQCKAQVEGLTCSHCRPHHFH 296
>AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGC-GSVDGARCKRSRPGRFH 89
S++C AG C V+G C RP FH
Sbjct: 1284 SSQCDAAGQCQCKAQVEGLTCSHCRPHHFH 1313
>AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGC-GSVDGARCKRSRPGRFH 89
S++C AG C V+G C RP FH
Sbjct: 1284 SSQCDAAGQCQCKAQVEGLTCSHCRPHHFH 1313
>AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteoglycan
perlecan protein.
Length = 4370
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 SARCSNAGYFGC-GSVDGARCKRSRPGRFH 89
S++C AG C V+G C RP FH
Sbjct: 1263 SSQCDAAGQCQCKAQVEGLTCSHCRPHHFH 1292
>AK124863-1|BAC85971.1| 246|Homo sapiens protein ( Homo sapiens
cDNA FLJ42873 fis, clone BRHIP2026061. ).
Length = 246
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 15 SNAGYFGCGSVDGARCKRSRPGRFHGKAGWRVHKHLYESPG 137
S A G G G R R R ++HG GW+ + ++ SPG
Sbjct: 126 SGAKRAGHGEAAGTRGCRER--QWHGARGWKRKQAVWPSPG 164
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,604,498
Number of Sequences: 237096
Number of extensions: 958054
Number of successful extensions: 2776
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2776
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -