Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J13
(277 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 3.3
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 3.3
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 26 3.3
Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical pr... 26 4.4
AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical ... 25 5.8
Z68882-12|CAA93103.2| 204|Caenorhabditis elegans Hypothetical p... 25 7.7
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 25 7.7
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 25 7.7
U39996-3|AAA81089.1| 621|Caenorhabditis elegans Hypothetical pr... 25 7.7
U39996-2|AAU20848.1| 607|Caenorhabditis elegans Hypothetical pr... 25 7.7
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 25 7.7
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 25 7.7
>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 121 FMNLLDALKTSFSHRSLAARSMGRQDSVFYAAIAGLVMSKPYLR 252
F++++DAL S SLA + GR+ S+F A+ V S +R
Sbjct: 740 FLSVIDAL-IRLSDESLAVAATGRESSLFPLAVLYKVCSLSLMR 782
>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 121 FMNLLDALKTSFSHRSLAARSMGRQDSVFYAAIAGLVMSKPYLR 252
F++++DAL S SLA + GR+ S+F A+ V S +R
Sbjct: 740 FLSVIDAL-IRLSDESLAVAATGRESSLFPLAVLYKVCSLSLMR 782
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 19 MQGILAAVLST--VLGAKDPDQVASMAKQAGEFINIFMNLLD 138
++G++ A+L L AK P+QV S++ IN +NL D
Sbjct: 3140 LEGMVCALLPMYEALHAKYPNQVQSVSLAVDICINFLLNLFD 3181
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 19 MQGILAAVLST--VLGAKDPDQVASMAKQAGEFINIFMNLLD 138
++G++ A+L L AK P+QV S++ IN +NL D
Sbjct: 3140 LEGMVCALLPMYEALHAKYPNQVQSVSLAVDICINFLLNLFD 3181
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 19 MQGILAAVLST--VLGAKDPDQVASMAKQAGEFINIFMNLLD 138
++G++ A+L L AK P+QV S++ IN +NL D
Sbjct: 3140 LEGMVCALLPMYEALHAKYPNQVQSVSLAVDICINFLLNLFD 3181
>Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical
protein T27F6.2 protein.
Length = 421
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 3 SARCSNAGYFGCGSVDGARCKRSRP 77
S C+N GY+ C G +C + P
Sbjct: 272 STNCNNPGYYICKRQAGVQCSAAPP 296
>AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical
protein B0212.3 protein.
Length = 672
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 10 DAPMQGILAAVLSTVLGAKDPDQVASMAKQAGEFINIFMNLLDALKTSFSHRSL 171
+ P QG+ T L + + +S+ + G ++ F+NLL+ + TS +L
Sbjct: 511 EVPNQGVYHVEPETKLSYINTNPGSSVTESGGIKLHKFLNLLELILTSLESDTL 564
>Z68882-12|CAA93103.2| 204|Caenorhabditis elegans Hypothetical
protein C47E12.9 protein.
Length = 204
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 28 ILAAVLSTVLGAKDPDQVASMAKQAGEFINIFMNLLDALKT 150
++A +G +DP + + K E + IF+N DALKT
Sbjct: 74 VMAIPFCAPVGKRDPVLMNPIEK-VKENVEIFVNYRDALKT 113
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 80 TWSGSFAPSTVDRTAAKIPC 21
TWS FAPS+++ K C
Sbjct: 1020 TWSRHFAPSSLEHCIEKFSC 1039
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 80 TWSGSFAPSTVDRTAAKIPC 21
TWS FAPS+++ K C
Sbjct: 1023 TWSRHFAPSSLEHCIEKFSC 1042
>U39996-3|AAA81089.1| 621|Caenorhabditis elegans Hypothetical
protein C56E6.3a protein.
Length = 621
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 198 VLATHRSRGERSMRKRSLQCIQEIHKDVYELS 103
+ ++ + E+ ++K Q I+E +VYELS
Sbjct: 237 LFSSSSEKNEKKLKKAEQQLIKEEEAEVYELS 268
>U39996-2|AAU20848.1| 607|Caenorhabditis elegans Hypothetical
protein C56E6.3b protein.
Length = 607
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 198 VLATHRSRGERSMRKRSLQCIQEIHKDVYELS 103
+ ++ + E+ ++K Q I+E +VYELS
Sbjct: 237 LFSSSSEKNEKKLKKAEQQLIKEEEAEVYELS 268
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 80 TWSGSFAPSTVDRTAAKIPC 21
TWS FAPS+++ K C
Sbjct: 1020 TWSRHFAPSSLEHCIEKFSC 1039
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +3
Query: 12 CSNAGYFGCGSVDGARCKRSRPGRFHGKAGWRVHKHLYESPGCTED 149
CS GY G G +R GR +A ++ +Y C D
Sbjct: 412 CSKIGYNGLGFCCSGPASSTRDGRCPSQAADKLKCLIYPDNSCHSD 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,114,488
Number of Sequences: 27780
Number of extensions: 140108
Number of successful extensions: 434
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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