Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J12
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    28   0.15 
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   1.8  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   4.2  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    23   5.6  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.4  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   7.4  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    22   9.7  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    22   9.7  

>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 145 IKRKLLLTILNNLSDVLFLNLEVHN 71
           I R LLL I NN+  + +L+ + HN
Sbjct: 312 ISRSLLLAISNNIGQIAYLHAQKHN 336


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 118 LNNLSDVLFLNLEVHNNIKLI-VFRLVIFL 32
           LN +SD+ FLN E+  + KL  V + + FL
Sbjct: 295 LNAISDIPFLNYELITSTKLAKVLKRIAFL 324


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 145 IKRKLLLTILNNLSDVLFLNLEVHNNIKLIVFRLV 41
           I   +L+++LN +S  +FLN  +  N   +V  LV
Sbjct: 140 IMASVLISVLNYISQKIFLNGLILGNSHNVVTSLV 174


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 115 NNLSDVLFLNLEVHNNIKLIVFRLVIFLINVIFD 14
           N +SD+ FLNL  H+      F+ +  L+  I D
Sbjct: 449 NFISDIFFLNLAFHHYGVNATFKALEQLVQSIRD 482


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 96  NTSDKLFNIVNNNLRLIAAN 155
           N S K FN+ NNN ++   N
Sbjct: 7   NYSHKNFNVTNNNFQVSCFN 26


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 121 ILNNLSDVLFLNLEVHNNIKLIVFRLVIFLIN 26
           + NNL+D     L V  ++ L V RL+  L N
Sbjct: 22  VKNNLTDGKARALTVFESLPLEVLRLIFLLSN 53


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 76  VPPDLKIIHPISYLI 120
           VPP+ +  HP +YL+
Sbjct: 226 VPPNFESFHPKNYLV 240


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 118 LNNLSDVLFLNLEVHNNIKLIVFRLVIFLINVIF 17
           L  L    F+  E+ N+I +  FRL++  + V+F
Sbjct: 160 LRRLIKCQFVAEEIDNDIAITAFRLLVGDLLVLF 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,982
Number of Sequences: 5004
Number of extensions: 8910
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)