Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J12
         (195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0181 + 14592392-14592421,14593627-14593633,14594222-145942...    25   6.4  
01_04_0140 + 16572497-16572528,16572958-16573063,16573509-165735...    25   6.4  

>11_04_0181 +
           14592392-14592421,14593627-14593633,14594222-14594265,
           14594351-14594419,14594461-14594517,14594824-14595204
          Length = 195

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -3

Query: 151 AAIKRKLLLTILNNLSDVLFLNLEVHNNIKLIVFRLVIFLINVIFDIS 8
           A +  K+++ +L+ + DV  L++    +I L+  RL    + V+FD+S
Sbjct: 115 AEVSLKIIVLLLHQVVDVGELSI----SILLLFLRLCYVFLEVVFDLS 158


>01_04_0140 +
           16572497-16572528,16572958-16573063,16573509-16573567,
           16573615-16573681,16573964-16573989,16574787-16574913,
           16576542-16576609,16577223-16577329,16577837-16577902,
           16579332-16579438
          Length = 254

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 96  NTSDKLFNIVNNNLRLIAANIRIL 167
           NT D+ F  + NN+RL+   +R++
Sbjct: 42  NTEDQRFQSIANNMRLVDLKLRMV 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,861,126
Number of Sequences: 37544
Number of extensions: 48115
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)