Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J12
         (195 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY254099-1|AAP80572.1| 2030|Homo sapiens DOCK3 protein.                27   8.0  
AY145303-1|AAN12301.1| 2030|Homo sapiens modifier of cell adhesi...    27   8.0  
AB002297-1|BAA20759.1| 1907|Homo sapiens KIAA0299 protein.             27   8.0  

>AY254099-1|AAP80572.1| 2030|Homo sapiens DOCK3 protein.
          Length = 2030

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -3

Query: 130 LLTILNNLSDVLFLNLEVHNN-IKLIVFRLVIFLINVIFDI 11
           ++  L ++ D LF+ L+ +     L+VF+ ++F+IN++ DI
Sbjct: 637 IVKFLQDILDTLFVILDDNTEKYGLLVFQSLVFIINLLRDI 677


>AY145303-1|AAN12301.1| 2030|Homo sapiens modifier of cell adhesion
           protein.
          Length = 2030

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -3

Query: 130 LLTILNNLSDVLFLNLEVHNN-IKLIVFRLVIFLINVIFDI 11
           ++  L ++ D LF+ L+ +     L+VF+ ++F+IN++ DI
Sbjct: 637 IVKFLQDILDTLFVILDDNTEKYGLLVFQSLVFIINLLRDI 677


>AB002297-1|BAA20759.1| 1907|Homo sapiens KIAA0299 protein.
          Length = 1907

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -3

Query: 130 LLTILNNLSDVLFLNLEVHNN-IKLIVFRLVIFLINVIFDI 11
           ++  L ++ D LF+ L+ +     L+VF+ ++F+IN++ DI
Sbjct: 514 IVKFLQDILDTLFVILDDNTEKYGLLVFQSLVFIINLLRDI 554


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,049,285
Number of Sequences: 237096
Number of extensions: 299254
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1328536760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)