Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J12
         (195 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U64833-6|AAK95861.1|  350|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z72515-2|CAA96682.3|  329|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical
           protein T07F8.2 protein.
          Length = 426

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 76  VPPDLKIIHPISYLISL 126
           VPP +K++H ISY  S+
Sbjct: 359 VPPSMKVLHSISYRSSI 375


>U64833-6|AAK95861.1|  350|Caenorhabditis elegans Hypothetical
           protein B0507.8 protein.
          Length = 350

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 93  NNTSDKLFNIVNNNLRLIAANIRILS 170
           ++  D LFNI+ NNL+ IA N R+++
Sbjct: 299 SDLKDDLFNII-NNLQPIAENRRVIT 323


>AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical
           protein Y17G7B.4 protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 110 LIGCIIFKSGGTQQY*INCIQTCYI 36
           L+ CI+  +GG ++  I C++  Y+
Sbjct: 131 LVDCIVTSAGGIEEDLIKCLKPSYL 155


>Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical
           protein C35D6.10 protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 178 VVVERIRMFAAIKRKLLLTILNNLSDVLFLNLEVHNNIKLIVFRLV--IFLINVIF 17
           +++  + M + +   L L+ILN +  + +L     NN+ + +F L+  + +  VI+
Sbjct: 180 IILFCMAMSSVLSSLLHLSILNKIRKLAYLESTQLNNLYIYIFWLITTVVMFKVIY 235


>Z72515-2|CAA96682.3|  329|Caenorhabditis elegans Hypothetical
           protein T11A5.2 protein.
          Length = 329

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 124 TILNNLSDVLFLNLEVHNNIKLIVFRLVIFLI 29
           TI+ NLS+  FL + +  N+ + +  L +FL+
Sbjct: 7   TIMANLSNSNFLRVSLGINLIICILGLPVFLV 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,621,837
Number of Sequences: 27780
Number of extensions: 50643
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)