Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J11
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    44   4e-06
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   0.79 
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    24   2.4  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    23   7.4  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    23   7.4  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    23   7.4  
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    22   9.7  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 32  YLFIYCCLYFMIKLNIEDAASTFLYFGYTVIMVXXXXXXTGTIGFMACFWFV 187
           Y+FI+   Y+  K++    A+  LYFGY++++        G++GF   F FV
Sbjct: 568 YVFIFSVFYWFFKISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFV 619


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 68  KLNIEDAASTFLYFGYTVIMV 130
           + N+ +A+  FLY  YTV MV
Sbjct: 246 RANLSEASLMFLYIAYTVYMV 266


>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 112 TEVQEGRGGIFDVQLDHEIETAVDEEVTG 26
           TEV + + G  D +LD E +  +++ V G
Sbjct: 152 TEVLKSKNGSIDYELDAETDDFLNDSVLG 180


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 8   GISARGAGYLF 40
           GIS RGAGY F
Sbjct: 223 GISPRGAGYTF 233


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   RVRDIGTRCR 30
           R+RD+GT+CR
Sbjct: 387 RMRDLGTKCR 396


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 8   GISARGAGYLF 40
           GIS RGAGY F
Sbjct: 210 GISPRGAGYTF 220


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 8   GISARGAGYLF 40
           G+S RGAG+LF
Sbjct: 206 GLSPRGAGFLF 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,479
Number of Sequences: 5004
Number of extensions: 5085
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)