Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J11
         (195 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    62   4e-11
Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    46   4e-06
AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical ...    44   1e-05
Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity...    25   7.4  
Z98866-3|CAB11559.1|  321|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AB070574-1|BAB63948.1|  321|Caenorhabditis elegans Ser/Thr prote...    25   9.8  

>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 29/53 (54%), Positives = 33/53 (62%)
 Frame = +2

Query: 32  YLFIYCCLYFMIKLNIEDAASTFLYFGYTVIMVXXXXXXTGTIGFMACFWFVR 190
           YLFIYC  +F  KL I    ST LYF YT I V      TGTIGF+A ++FVR
Sbjct: 594 YLFIYCIHFFNTKLTISGTISTILYFSYTSIFVFMFFLMTGTIGFLATYYFVR 646


>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +2

Query: 11  ISARGAGYLFIYCCLYFMIKLNIEDAASTFLYFGYTVIMVXXXXXXTGTIGFMACFWFV 187
           IS   + Y+  Y   Y+  KL IE    T LYF Y+ ++       TGTIGF A  +F+
Sbjct: 551 ISGGSSFYVMAYAVFYYNTKLTIEGFVPTVLYFSYSSLIALTFFFMTGTIGFYASHFFL 609


>AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical
           protein Y41D4A.4 protein.
          Length = 580

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +2

Query: 5   CGISARGAGYLFIYCCLYFMIKLNIEDAASTFLYFGYTVIMVXXXXXXTGTIGFMACFWF 184
           CG S   A Y+++Y   YF  K  +     T  YFGY  I        TGTIG++    F
Sbjct: 512 CGAST--AFYVYMYSMYYFFFKTKMYGLFQTVFYFGYMGIFAAALGLMTGTIGYVGTAKF 569

Query: 185 VR 190
           VR
Sbjct: 570 VR 571


>Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical
           protein C06G8.2 protein.
          Length = 785

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 53  LYFMIKLNIEDAASTFLYFGYTVIMVXXXXXXTGTI---GFMACFWFV 187
           LYF   LN   + ST L+  +TVI         G+I   G++  FW +
Sbjct: 57  LYFFNILNFSQSFSTVLFHAFTVIC--YSSPLLGSILADGYIGKFWTI 102


>AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity
           peptide transporter protein.
          Length = 785

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 53  LYFMIKLNIEDAASTFLYFGYTVIMVXXXXXXTGTI---GFMACFWFV 187
           LYF   LN   + ST L+  +TVI         G+I   G++  FW +
Sbjct: 57  LYFFNILNFSQSFSTVLFHAFTVIC--YSSPLLGSILADGYIGKFWTI 102


>Z98866-3|CAB11559.1|  321|Caenorhabditis elegans Hypothetical
           protein Y49E10.3a protein.
          Length = 321

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +2

Query: 8   GISARGAGYLF 40
           GIS RGAGYLF
Sbjct: 218 GISPRGAGYLF 228


>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 35  LFIYC--CLYFMIKLNIEDAASTFLYFGYTVIMVXXXXXXTGTIGFMACFW 181
           +F++C  CL   + L  +  A  FL  G  VI++      +  +GF   F+
Sbjct: 250 IFVFCEVCLKNRLYLLFQFFAFDFLTVGSAVIIMLSSPQLSNFLGFSGTFY 300


>AB070574-1|BAB63948.1|  321|Caenorhabditis elegans Ser/Thr protein
           phosphatase protein.
          Length = 321

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +2

Query: 8   GISARGAGYLF 40
           GIS RGAGYLF
Sbjct: 218 GISPRGAGYLF 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,972
Number of Sequences: 27780
Number of extensions: 31659
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)