Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J10
         (64 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1199 - 28339942-28340703                                         26   4.9  
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835...    26   4.9  

>06_03_1199 - 28339942-28340703
          Length = 253

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 4   RGPGNTSCRWLFVD 45
           RGPG TS RWL +D
Sbjct: 188 RGPGVTSLRWLALD 201


>05_04_0401 -
           20982923-20983106,20983129-20983186,20983322-20983503,
           20983637-20983752,20984148-20984234,20984334-20984477,
           20984556-20984672,20984790-20984936,20985717-20985938,
           20986919-20987072,20987583-20987632,20987870-20987921,
           20987985-20988211
          Length = 579

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 7   GPGNTSCRWLFVDLF 51
           GP NT+CR L + LF
Sbjct: 181 GPANTACRGLLISLF 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,223
Number of Sequences: 37544
Number of extensions: 8721
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 14,793,348
effective HSP length: 2
effective length of database: 14,718,260
effective search space used: 264928680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)