Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J08
         (117 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   0.34 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   0.34 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   3.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    19   4.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   5.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 66  LFYSTVVLHNFKMNKKIYL 10
           +FY+T V   F +N+++YL
Sbjct: 121 VFYNTAVWARFNVNEQMYL 139


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 66  LFYSTVVLHNFKMNKKIYL 10
           +FY+T V   F +N+++YL
Sbjct: 121 VFYNTAVWARFNVNEQMYL 139


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 83  IIYRDSFSIQQWSYIISR*IRK 18
           + YRDS ++  ++ I++  +RK
Sbjct: 317 LYYRDSLALSVFALILTALLRK 338


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 57  STVVLHNFKMNKKIY 13
           S   +HN   NKK+Y
Sbjct: 319 SNNTIHNNNYNKKLY 333


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 54  TVVLHNFKMNKKIYLVP 4
           TVV+  FK++++ ++ P
Sbjct: 439 TVVIGTFKLHRQPHIYP 455


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 115 LCIYCKHMHLILF 77
           +C+Y   +++ILF
Sbjct: 753 VCLYSPKIYIILF 765


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 115 LCIYCKHMHLILF 77
           +C+Y   +++ILF
Sbjct: 843 VCLYSPKIYIILF 855


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,403
Number of Sequences: 438
Number of extensions: 249
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 19
effective length of database: 138,021
effective search space used:  2622399
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)