Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J07
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 62 3e-11
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 62 3e-11
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 56 2e-09
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 28 0.37
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 0.37
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 27 1.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 1.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 2.6
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 4.6
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 4.6
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 6.1
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 24 8.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 24 8.0
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 24 8.0
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 24 8.0
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 61.7 bits (143), Expect = 3e-11
Identities = 34/82 (41%), Positives = 43/82 (52%)
Frame = +1
Query: 109 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRFSASIKKRKEICKRAEQYVKEYRIKERD 288
SK+ PES+ ++ +A KKR+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 289 EIRLARQARNRGNYYVPGEAKL 354
+I L R+AR GNYYVP E KL
Sbjct: 70 QIELGRKARAEGNYYVPDETKL 91
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 61.7 bits (143), Expect = 3e-11
Identities = 33/75 (44%), Positives = 41/75 (54%)
Frame = +1
Query: 130 PESVXXXXXXXXXXXXXXXQITLKRFSASIKKRKEICKRAEQYVKEYRIKERDEIRLARQ 309
PES+ ++ SA KKR+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 310 ARNRGNYYVPGEAKL 354
AR GNY+VP E KL
Sbjct: 76 ARAEGNYFVPHEPKL 90
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 55.6 bits (128), Expect = 2e-09
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +1
Query: 211 ASIKKRKEICKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 354
A K RKE KRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL
Sbjct: 42 AQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKL 89
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 28.3 bits (60), Expect = 0.37
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 214 SIKKRKEICKRAEQYVKEYRIKERDEIRLARQARNRGN 327
S+K+ +EI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.3 bits (60), Expect = 0.37
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 303 CQSDFITLLDAVFFDILFGSLTDFFPLLNGSGKPLECDLKTASSE 169
C+ +F+ +D + ++ L D PLLN + KP + DL SSE
Sbjct: 1680 CKEEFLLTVDGIRL-LVISQLHDL-PLLNINIKPFQVDLNDWSSE 1722
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 1.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 211 ASIKKRKEICKRAEQYVKEYRIKERDEIRLARQAR 315
+++KKR C RA QY E + RL R +
Sbjct: 5 STLKKRLAACNRASQYKLETSLNPMPTFRLLRNTK 39
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 1.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 244 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 345
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 199 KRFSASIKKRKEICKRAEQYVKEYRIKERDEIRLARQARNRGN 327
KR A ++ K+ +R ++ + E KE++ IRL + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 4.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 217 IKKRKEICKRAEQYVKEYR-IKERDEIRLARQAR 315
++K ICK E Y KE R IKE ++ R +AR
Sbjct: 494 LRKDVVICKTPENYHKEGRVIKEGEQPRKMVKAR 527
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 4.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 219 NGSGKPLECDLKTASSECLPPFT 151
+ SGK ++ L + S ECLP F+
Sbjct: 37 SSSGKLVDMVLDSTSKECLPKFS 59
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 213 SGKPLECDLKTASSECLPPFTVLQ 142
S PLE DL+ +ECL P ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 199 KRFSASIKKRKEICKRAEQYVKE 267
KRF+ + KKRK K AE+ +E
Sbjct: 192 KRFAPNEKKRKRRAKAAEREAQE 214
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 187 EDGELGVPPSFYGASRLIPEQLA 119
ED L +PP G +L PE++A
Sbjct: 178 EDELLELPPETSGRKKLTPEEMA 200
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 305 LANLISSRSLMRYSLTYCSALLQISFLFL 219
+ +L+S +SL T+C+++L +SF L
Sbjct: 261 VVHLLSQKSLPYSLTTFCASILVLSFFQL 289
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 214 SIKKRKEICKRAEQYVKEYRIKERDEIRLARQARN 318
S K ++E +R +QYV E E+D+I + + ++
Sbjct: 70 SFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,330
Number of Sequences: 5004
Number of extensions: 26098
Number of successful extensions: 82
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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