Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J07
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 53 8e-08
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 52 1e-07
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37... 29 1.1
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747... 28 2.5
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 26 7.6
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 26 7.6
08_02_0588 + 19036509-19039235 26 7.6
07_03_0988 + 23160028-23160360 26 7.6
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 52.8 bits (121), Expect = 8e-08
Identities = 28/80 (35%), Positives = 42/80 (52%)
Frame = +1
Query: 115 KLPAVPESVXXXXXXXXXXXXXXXQITLKRFSASIKKRKEICKRAEQYVKEYRIKERDEI 294
K VPESV + L +++ RK I RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 295 RLARQARNRGNYYVPGEAKL 354
+L R+AR +G +YV EAKL
Sbjct: 67 QLKREARMKGGFYVSPEAKL 86
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 52.0 bits (119), Expect = 1e-07
Identities = 27/76 (35%), Positives = 40/76 (52%)
Frame = +1
Query: 127 VPESVXXXXXXXXXXXXXXXQITLKRFSASIKKRKEICKRAEQYVKEYRIKERDEIRLAR 306
VPESV + + SI+ RK I RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 307 QARNRGNYYVPGEAKL 354
+AR +G +YV E KL
Sbjct: 70 EARMKGGFYVSPEEKL 85
>11_01_0049 -
375049-375342,375596-375660,375907-375956,376492-376541
Length = 152
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 221 RRGKKSVREPNNMSKNTASRSVMKSDWQDRLVTVA 325
R+G KS+ P N K+ R +M S+ + L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142
>03_06_0775 -
36174098-36174204,36174540-36174594,36174690-36174741,
36174947-36175028,36175110-36175204,36175339-36175727
Length = 259
Score = 27.9 bits (59), Expect = 2.5
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = -2
Query: 291 FITLLDAVFFDILFGSLTDFFPLLNGSGKPLECDLKTASSECLPPFTVLQD*FRNSWQLL 112
+ LLD +L +TD L++ GK + + S P F V+ + W
Sbjct: 110 YYKLLDIKVLLVLHSHITDLQRLMDAMGKNFKFAIDEVSQGVEPTFAVM---WHLEWNGK 166
Query: 111 TVLFTLHRFFLGRSLLFCSRNHRAV 37
T+ FT G S CSR A+
Sbjct: 167 TIPFT-----KGCSFYICSRKEAAL 186
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 102 RGQ*EVASCSGISLEAP*KEGGTPSSPSSDHTQEVFRFH*EEERN 236
R + E CS +S++AP E P + S+ + +E H E+ +
Sbjct: 1303 RNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNS 1347
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 69 GCGRE-KTCEG*RGQ*EVASCSGISLEAP*KEGG 167
GCGR+ KT G ASC G+S E +GG
Sbjct: 303 GCGRDVKTGSGLEFMAVDASCGGVSKEVVASDGG 336
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 69 GCGRE-KTCEG*RGQ*EVASCSGISLEAP*KEGG 167
GCGR+ KT G ASC G+S E +GG
Sbjct: 453 GCGRDVKTGSGLEFMAVDASCGGVSKEVVASDGG 486
>07_03_0988 + 23160028-23160360
Length = 110
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 261 DILFGSLTDFFPLLNGSGKPLECDLKTAS 175
+++ G DFFP++ G G +C+L +S
Sbjct: 81 EMVDGDTVDFFPVMIGGGGFFQCNLLPSS 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,829,450
Number of Sequences: 37544
Number of extensions: 189209
Number of successful extensions: 491
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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