Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J06
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   124   2e-30
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   124   2e-30
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   124   2e-30
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    45   2e-06
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   0.92 
SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit Ym...    25   1.6  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    23   6.5  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    23   8.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    23   8.5  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    23   8.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   8.5  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  124 bits (300), Expect = 2e-30
 Identities = 59/63 (93%), Positives = 62/63 (98%)
 Frame = +3

Query: 96  MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGFKKPHRYRPGTVALREIRRYQKSTE 275
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGG KKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 276 LLI 284
           LLI
Sbjct: 61  LLI 63


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  124 bits (300), Expect = 2e-30
 Identities = 59/63 (93%), Positives = 62/63 (98%)
 Frame = +3

Query: 96  MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGFKKPHRYRPGTVALREIRRYQKSTE 275
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGG KKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 276 LLI 284
           LLI
Sbjct: 61  LLI 63


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  124 bits (300), Expect = 2e-30
 Identities = 59/63 (93%), Positives = 62/63 (98%)
 Frame = +3

Query: 96  MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGFKKPHRYRPGTVALREIRRYQKSTE 275
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGG KKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 276 LLI 284
           LLI
Sbjct: 61  LLI 63


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 44.8 bits (101), Expect = 2e-06
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +3

Query: 216 RYRPGTVALREIRRYQKSTELLI 284
           RYRPGT ALREIR+YQ+ST+LLI
Sbjct: 21  RYRPGTTALREIRKYQRSTDLLI 43


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 0.92
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 183 APSTGGFKKPHRYRPGTVALREIRRY 260
           APS  G+K P    P T+ + EIRR+
Sbjct: 25  APSGLGWKSPSLAEPFTLPISEIRRF 50


>SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit
           YmL33|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 97

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 147 RKQLATKAARKSAPSTGGFKKPHRYRPGTVALREI 251
           +++LA    +KS  S+ GF   HRY  G   L  +
Sbjct: 60  KQKLAAGQEKKSLASSSGFTVIHRYNNGLKELNNM 94


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +3

Query: 108 KQTARKSTGGKAPRKQLATKAARKSAPSTGGFKKPHRYRPGTVALREIRRYQKSTE 275
           ++T  ++   +  R   AT       PS G F+ P       +  R ++R+Q+  E
Sbjct: 506 QETPSEAVSREGTRSTDATMEDSSRPPSNGSFQGPGITHLSEMGQRILQRFQEEME 561


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 127 LQEVKLLANNWLLKRRENRHPVLVDLRNPIV 219
           L E +L    W+ +R E +H  L    +PIV
Sbjct: 20  LDEERLEVLRWMKEREEKKHRQLALQYDPIV 50


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = +3

Query: 66  IDFRSSLK*IMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGG--FKK 209
           I F+  L      TKQT   +   K P+       ++K  P   G  FKK
Sbjct: 528 ISFKRQLDSFAEETKQTVENTEPLKVPQADDTAALSKKRKPGQEGDVFKK 577


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 196 PVLGADFRAALVANCL 149
           P  G +FR+ +++NCL
Sbjct: 436 PTFGFNFRSDIISNCL 451


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 105 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGFKKPH 215
           T      STG  +    L   A++KS PS     KP+
Sbjct: 282 TSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPN 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,008
Number of Sequences: 5004
Number of extensions: 21663
Number of successful extensions: 51
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)