Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J06
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   5.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   5.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   6.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   6.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   6.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   6.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 141 APRKQLATKAARKSAPSTGGFKKPHRYRPGTVA 239
           A R  L    A     S  G+K   R+R  TVA
Sbjct: 8   AARSFLLLSIASTYVVSVAGYKHSRRHRDFTVA 40


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 156 IVCEELYLL*IYGLFALYVPLFTSV 82
           +VC+  +      L + Y+PLF  +
Sbjct: 195 VVCQNFFYQIYATLGSFYIPLFVMI 219


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 102 RTKQTARKSTGGKAPRKQLATKAARKSAPSTGGF 203
           R  +  +++   +  R ++ TKAA+      GGF
Sbjct: 433 RVMKMGKRNIKAQVKRFRMETKAAKTLGIIVGGF 466


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 123 YGLFALYVPLF 91
           YG++  +VPLF
Sbjct: 220 YGIWVYFVPLF 230


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 278 QLRRFLIATNFSKRYSTRAITM 213
           QL   L  +  S+ YSTRAI +
Sbjct: 291 QLEYDLQTSIMSRHYSTRAIVI 312


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 108 LYVPLFTSVSF*NLLTI*NCTKIGFINKFHNN 13
           +++   T + F   L +     +G  NKF+NN
Sbjct: 279 VWIDAVTQIFFSYALGLGALVALGSYNKFNNN 310


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 108 LYVPLFTSVSF*NLLTI*NCTKIGFINKFHNN 13
           +++   T + F   L +     +G  NKF+NN
Sbjct: 332 VWIDAVTQIFFSYALGLGALVALGSYNKFNNN 363


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 123 YGLFALYVPLF 91
           YG++  +VPLF
Sbjct: 96  YGIWVYFVPLF 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,177
Number of Sequences: 438
Number of extensions: 1403
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)