Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J05
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    30   0.049
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   0.35 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   1.9  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.2  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    23   5.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   5.7  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    23   5.7  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    23   5.7  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    23   7.5  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    23   9.9  

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 30.3 bits (65), Expect = 0.049
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 190 FLRQFCFRGYWNKITFSCVNVTVSF*NGIFCSVLSSLSIVQC 65
           F+  FCF   W +    C+ VTV F     C  ++++S+ QC
Sbjct: 132 FIAIFCFFETWTQAVAQCIKVTVIF--LAQCVKVTAISLAQC 171


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 0.35
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 190 FLRQFCFRGYWNKITFSCVNVTVSF 116
           F+  FCF   W +    C+ VTV F
Sbjct: 133 FIATFCFFETWTQAVAQCIKVTVIF 157


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 266 F*VYFSANLRDVYVNLKHLLLFHWLFSAPVLFPWL 162
           F +Y    L     ++ HL+ FH+LF + + FP L
Sbjct: 158 FLLYHQIILSHSLFHISHLISFHFLFFSFLSFPLL 192


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 254 FSANLRDVYVNLKHLLLFHW 195
           + AN   + +NL+H+ L+H+
Sbjct: 21  WKANFESIRINLQHMHLYHY 40


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 236 DVYVNLKHLLLFHWLFSAPVLF 171
           ++Y+ L + +L+ W  + P+LF
Sbjct: 324 NIYIGLIYSILYLWFEAFPILF 345


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 83   LEHRPVHLILYS 48
            LEHRP H+I Y+
Sbjct: 2335 LEHRPTHVISYT 2346


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 257 YFSANLRDVYVNLKHLLLFHWLFSA 183
           YF  N R + V L  ++ + WL +A
Sbjct: 95  YFQHNFRSIIVMLLPVMAYGWLVTA 119


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 233 VYVNLKHLLLFHWLFSAPVLF 171
           +Y+ L + +L+ W  + P+LF
Sbjct: 325 IYIGLVYSILYLWFEAFPILF 345


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -1

Query: 134 QCHC*LLEWHFLQR--LEQLEHRPVHLILY 51
           QC C  L W F  R   ++  H+P+    Y
Sbjct: 553 QCECKSLHWRFSDRSNCDECGHKPMSHTCY 582


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 212 LLLFHWLFSAPVLFPWLL 159
           LL FH + +A  LFPW +
Sbjct: 44  LLCFHLVPNALFLFPWTI 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,411
Number of Sequences: 5004
Number of extensions: 13051
Number of successful extensions: 34
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)