Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J05
         (269 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    31   0.13 
01_01_0394 - 3029594-3030163                                           26   3.6  
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    26   4.7  

>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 145 FSCVNVTVSF*NGIFCSVLSSLSIVQC 65
           FSC    + F NGI CSV++S S+++C
Sbjct: 161 FSCSGTIIEFLNGI-CSVVTSASLIRC 186


>01_01_0394 - 3029594-3030163
          Length = 189

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 122 NSDIDAAKSDLIPIATETELAQKKANETKEDV 217
           N  +DAA  DL+    + E  +K AN+ + DV
Sbjct: 155 NERLDAAVDDLLAAIGKVESGKKMANDARLDV 186


>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
            29646843-29646899,29647007-29647094,29647304-29647374,
            29647457-29647585,29647662-29648051,29648332-29648517,
            29648612-29648692,29648787-29648879,29648966-29649086,
            29649200-29649409,29649560-29649727,29649898-29650065,
            29650144-29650311,29650453-29650620,29650738-29650905,
            29651023-29651190,29651567-29651734,29652391-29652558,
            29652645-29652812,29655720-29655887,29656069-29656236,
            29656391-29656558,29656670-29656837,29657525-29657664,
            29658033-29658221,29658243-29658315,29658379-29658452,
            29658535-29658654,29658718-29658738,29658794-29658999,
            29659094-29659271,29660066-29660126,29660232-29660341,
            29660427-29660558,29661091-29661258,29661339-29661465,
            29661794-29661831,29663321-29663422,29663505-29663562,
            29663659-29663760,29663844-29663990,29664098-29664234,
            29664313-29664462,29664561-29664720,29665820-29665878,
            29666025-29666181,29666288-29666433,29666523-29666666,
            29667242-29667376
          Length = 2344

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 101  ENAILKANSDIDAAKSDLIPIATETELAQKKANETKEDV*GLRIRLSDLQKNI 259
            +NAI+K   DI+A    L     E +  +K   E +E    L  ++SD +  I
Sbjct: 1712 QNAIIKLEGDIEAKDISLEAAREENDTIRKSLAEAQEKNEELLRKISDNEYRI 1764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,388,895
Number of Sequences: 37544
Number of extensions: 73338
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)