Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J05
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    25   5.6  
AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U04712-2|AAA81902.1|  565|Caenorhabditis elegans unc-87 protein.       25   7.3  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    25   7.3  
AF106590-6|AAT68897.1|  544|Caenorhabditis elegans Uncoordinated...    25   7.3  
AF106590-5|AAC78234.1|  565|Caenorhabditis elegans Uncoordinated...    25   7.3  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    25   7.3  
AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U41007-19|AAA82274.1|  432|Caenorhabditis elegans Hypothetical p...    25   9.7  
AL023815-5|CAA19428.2|  366|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 222 VYVYVSQICRKIYLK 266
           +YVYV+++CR I+L+
Sbjct: 304 LYVYVAELCRSIWLE 318


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 131  IDAAKSDLIPIATETELAQKKANETKEDV*GLRIRLS 241
            + A KSDL   +T +E  + K  E+KE+  G+ IR S
Sbjct: 4777 VSAEKSDLNFKSTNSETQKLKLFESKEEESGIFIRSS 4813


>AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 222 VYVYVSQICRKIYLK 266
           +YVYV+++CR I+L+
Sbjct: 304 LYVYVAELCRSIWLE 318


>Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical
           protein M176.8 protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 190 FLRQFCFRGYWNKITFSC 137
           F ++FC  G  NKI +SC
Sbjct: 383 FSKEFCSTGSGNKIKYSC 400


>U04712-2|AAA81902.1|  565|Caenorhabditis elegans unc-87 protein.
          Length = 565

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 155 IPIATETELAQKKANETK 208
           IPI T+T + Q +A ETK
Sbjct: 160 IPIKTQTPITQARAQETK 177


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 113 LKANSDIDAAKSDLIPIATETELAQKKANETKEDV*GLRIRLSDLQKNIL 262
           L  N++I   KSDL+P           A E K  + G+R R +D  + I+
Sbjct: 739 LNPNAEITVDKSDLLPFDMACNCG---ATECKRVIRGVRWRCADPNEKIV 785


>AF106590-6|AAT68897.1|  544|Caenorhabditis elegans Uncoordinated
           protein 87, isoform c protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 155 IPIATETELAQKKANETK 208
           IPI T+T + Q +A ETK
Sbjct: 139 IPIKTQTPITQARAQETK 156


>AF106590-5|AAC78234.1|  565|Caenorhabditis elegans Uncoordinated
           protein 87, isoform a protein.
          Length = 565

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 155 IPIATETELAQKKANETK 208
           IPI T+T + Q +A ETK
Sbjct: 160 IPIKTQTPITQARAQETK 177


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 113 LKANSDIDAAKSDLIPIATETELAQKKANETKEDV*GLRIRLSDLQKNIL 262
           L  N++I   KSDL+P           A E K  + G+R R +D  + I+
Sbjct: 739 LNPNAEITVDKSDLLPFDMACNCG---ATECKRVIRGVRWRCADPNEKIV 785


>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 208 FCFIGFFLRQFCFRGYWNKITFSCVNVT 125
           FCF  FF      R +W  I  +C+  T
Sbjct: 228 FCFTIFFFYTGLIRSFWISIYPACIKFT 255


>Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.5b protein.
          Length = 334

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 104 FLQRLEQLEHRPVHLILYSPFLMLNLHLV 18
           F+ ++  + H    ++LY+  L +N+H V
Sbjct: 48  FILKIRPIFHSSTKILLYTSLLFVNVHAV 76


>Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical
           protein F44F4.5a protein.
          Length = 336

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 104 FLQRLEQLEHRPVHLILYSPFLMLNLHLV 18
           F+ ++  + H    ++LY+  L +N+H V
Sbjct: 48  FILKIRPIFHSSTKILLYTSLLFVNVHAV 76


>U41007-19|AAA82274.1|  432|Caenorhabditis elegans Hypothetical
           protein C33H5.17 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 110 ILKANSDIDAAKSDLIPIA-----TETELAQKKANETKEDV*GLRIRLSDLQK 253
           +LK+  +I + + DL+PI      T+ E + +   E K++  G  + + DL K
Sbjct: 194 VLKSGIEISSKRKDLVPIGEVEEPTKQEQSSESWKELKQETLG-NVTVGDLGK 245


>AL023815-5|CAA19428.2|  366|Caenorhabditis elegans Hypothetical
           protein H28O16.2 protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 211 RCLRFTYTSLRFAEKYT 261
           +C+RF + SL F+ K+T
Sbjct: 123 QCIRFIHNSLTFSRKFT 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,925,347
Number of Sequences: 27780
Number of extensions: 74210
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)