Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J04
         (175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    24   2.3  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    23   4.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    23   5.4  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    23   5.4  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    23   5.4  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    23   7.1  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    22   9.4  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    22   9.4  

>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 17 DSHYCYYCLQI 49
          D  YCYYC ++
Sbjct: 14 DKEYCYYCFEV 24


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 105 RRSSK*QVTVSNYTAASVPNGFN 173
           RR     V  + YTA   PNGFN
Sbjct: 91  RRGDNILVLAACYTADGSPNGFN 113


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 20  SHYCYYCLQIK 52
           SHYC  C Q+K
Sbjct: 399 SHYCLKCFQVK 409


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/36 (22%), Positives = 22/36 (61%)
 Frame = -1

Query: 124 CYLDDLLRYRNDFLVQGSI*SYLCFNLQTVITVMGI 17
           C++ D+ + +++ +V  S  S+ CF+  T++ +  +
Sbjct: 16  CFIYDIEQLKDNVVVSYSTGSWSCFDKGTLLEIFKV 51


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   RHEEKIPITVITVCKLKHKYDYID 74
           +H  + PI +  VCK+  KY +++
Sbjct: 155 QHLLRYPIHLARVCKMLRKYPFLN 178


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +3

Query: 57  KYDY--IDPCTRKSFLYRRRSS 116
           KYDY  ID CT     YR+R S
Sbjct: 84  KYDYLLIDRCTVSLKRYRQRKS 105


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 81  CKDLYNRICVLI 46
           CK LYNRI +L+
Sbjct: 116 CKRLYNRIQILV 127


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 115 DDLLRYRNDFLVQGSI*SYLCFNLQTVITVMG 20
           DD LRY+    V+G+I   L  ++Q  + V G
Sbjct: 87  DDFLRYKTRIPVRGAI--MLDMSMQQCVLVKG 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,539
Number of Sequences: 5004
Number of extensions: 10094
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)