Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J04
         (175 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0311 - 15635165-15635590,15635777-15638698                       25   6.5  
08_01_0149 - 1176386-1177055,1177149-1177699                           25   6.5  

>08_02_0311 - 15635165-15635590,15635777-15638698
          Length = 1115

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 136  LTVTCYLDDLLRYRNDFLVQGSI*SYLCFNLQTVITVMGI 17
            L V C++  L  +   F+VQ    ++LC+ L   IT++ +
Sbjct: 931  LLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITLVAL 970


>08_01_0149 - 1176386-1177055,1177149-1177699
          Length = 406

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 124 CYL-DDLLRYRNDFLVQGSI*SYLCFNLQTVITVMGI 17
           CYL D+L  YR    +   I  ++  NL+T++TV  I
Sbjct: 351 CYLLDNLEAYRRKRWIWIPIHKFIYNNLKTIVTVFSI 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,443,312
Number of Sequences: 37544
Number of extensions: 62052
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)