Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J04
         (175 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    27   1.3  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = +3

Query: 6   HEEKIPITVITVCKLKHKYDYIDPCTRKSFLYR-------RRSSK*QVTVSNYTAASVPN 164
           + E++ +  + V     KYD+  P T  SFLY        R+  K     S YT   +PN
Sbjct: 234 YNEQVVMMYVLVGSEDEKYDFF-PKTTGSFLYYGEMFVNVRKVEKMDEERSRYTIEVLPN 292

Query: 165 GFN 173
           GF+
Sbjct: 293 GFS 295


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 54  HKYDYIDPCTRKSFLYRRRSSK*QVTVSNY 143
           H YDY +P     F  R  S K   T+S Y
Sbjct: 486 HGYDYFNPKMHTIFYARGPSFKQNTTISPY 515


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 54  HKYDYIDPCTRKSFLYRRRSSK*QVTVSNY 143
           H YDY +P     F  R  S K   T+S Y
Sbjct: 491 HGYDYFNPKMHTIFYARGPSFKQNTTISPY 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,952,106
Number of Sequences: 27780
Number of extensions: 58115
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)