Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J03
(155 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 74 2e-15
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 73 7e-15
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 1.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 1.8
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 3.1
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 23 4.1
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 23 7.2
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 23 7.2
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 22 9.5
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 22 9.5
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 22 9.5
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 22 9.5
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 74.1 bits (174), Expect = 2e-15
Identities = 33/51 (64%), Positives = 39/51 (76%)
Frame = +2
Query: 2 RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADLQAD 154
RKDWYD+KAP+ F + VG TLVNRT K A++ LKGR+ EVSLADLQ D
Sbjct: 26 RKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKD 76
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 72.5 bits (170), Expect = 7e-15
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +2
Query: 2 RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADLQAD 154
RK+WYD+KAP+ F + VG TLVNRT K A++ LKGR+ EVSLADLQ D
Sbjct: 26 RKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKD 76
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 105 PSDAIFVAWVRLTRVVPTCLLVNMDGALTSYQ 10
PSD+ F W +L R+V + + + LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 64 PCQSHPGNKNCI*GSKGACF 123
PC H K C G GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 87 VAWVRLTRVVPTCLLVNMDGALTSYQ 10
V+ +RL R P L+N D TSY+
Sbjct: 222 VSLIRLERTQPILHLMNFDDYSTSYE 247
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 82 LGAIDKGGAHLSLGEHGRRFNIVPVFT 2
LGAID G LGE F + P F+
Sbjct: 859 LGAIDSEGVLTKLGEQMSLFPLSPRFS 885
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 129 TSKTRPFRPSDAIFVAWVRLTRVVPTC 49
TSK P+ D ++RL + + TC
Sbjct: 501 TSKDSPYNMPDLTVPEYMRLAKRIATC 527
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 139 SKGDLKNTPL*TLRCNFCCLGAI 71
S +L TP + CNFC L A+
Sbjct: 212 SPENLSCTPCGHIFCNFCILSAL 234
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 128 PQKHAPLDPQMQFLLPGCD 72
P KHA LDP+ LL CD
Sbjct: 13 PGKHADLDPEPS-LLRYCD 30
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 61 GAHLSLGEHGRRFN 20
GAHL +G GR FN
Sbjct: 50 GAHLVVGGDGRYFN 63
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 52 SGHHPCQSHPGNKNCI*GSKGACF*GLPC 138
SG+ +PG+ C+ ++G C G C
Sbjct: 103 SGYTKADKNPGSFFCLYFARGMCSEGSKC 131
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 39 SPRDKWAPPLSIAPRQQKL 95
SP W P LSI P ++++
Sbjct: 86 SPNSFWRPYLSIFPTKERI 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,070
Number of Sequences: 5004
Number of extensions: 9513
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -