Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J03
(155 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 86 4e-18
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 85 6e-18
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 85 1e-17
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 0.68
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 1.6
09_02_0568 + 10748227-10748434,10749004-10749398 26 3.6
02_05_0952 + 33022742-33023125 26 3.6
01_01_1106 + 8750597-8754031 25 6.3
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 25 8.3
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 25 8.3
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 25 8.3
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636... 25 8.3
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 85.8 bits (203), Expect = 4e-18
Identities = 40/51 (78%), Positives = 44/51 (86%)
Frame = +2
Query: 2 RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADLQAD 154
+KDWYD+KAPS+F R VG TLV+RTQ TKIASEGLK RVFEVSLADLQ D
Sbjct: 26 KKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQND 76
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 85.4 bits (202), Expect = 6e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +2
Query: 2 RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADLQAD 154
+KDWYD+KAPS+F R +G TLV+RTQ TKIASEGLK RVFEVSLADLQ D
Sbjct: 26 KKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQND 76
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +2
Query: 2 RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADLQAD 154
+KDWYD+KAP++F+ R +G TLV+RTQ TKIASEGLK RVFEVSLADLQ D
Sbjct: 26 KKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQND 76
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 12 GTMLKRRPCSPRDKWAPPLSIAP 80
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 59 TTLVNRTQATKIASEGLKGRVFEV 130
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 15 TMLKRRPCSPRDKWAPPLSIAPRQQK 92
T+ KR+P RDK P++ AP +K
Sbjct: 163 TVAKRKPLQGRDKVGIPITPAPSNEK 188
>02_05_0952 + 33022742-33023125
Length = 127
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 127 LKNTPL*TLRCNFCCLGAIDKGGAHLSLGEH-GRR 26
++ P T RC +G + KG HLS+ GRR
Sbjct: 56 IERGPQLTCRCRRRFMGGVGKGAPHLSMARRKGRR 90
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 42 PRDKWAPPLSIAPRQQKLHLRV*RGVF-LRSPLLISR 149
P PPL P Q LHLR GV + S +L+ R
Sbjct: 882 PNCSCLPPLRHIPYLQSLHLRYMAGVHSMSSEILVKR 918
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 18 MLKRRPCSPRDKWAPPLSIAP 80
++K PC+ ++ W P S+AP
Sbjct: 125 VIKISPCARKECWIDPFSMAP 145
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 18 MLKRRPCSPRDKWAPPLSIAP 80
++K PC+ ++ W P S+AP
Sbjct: 120 VIKISPCARKECWIDPFSMAP 140
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 149 PGDQQGRPQKHAPLDPQMQFLLPGCD 72
PGD+ P H P+ +Q L P D
Sbjct: 587 PGDEDLPPVNHIPIPDPVQLLAPQVD 612
>02_05_0587 +
30162806-30163183,30163315-30163478,30163571-30163654,
30163737-30163794,30164092-30164145,30164244-30164309,
30164310-30164381,30164547-30164627,30165361-30165533,
30165916-30166018,30166148-30166279,30166432-30166554,
30166898-30167002,30167397-30167722,30167919-30168258,
30169973-30170113,30170589-30170801,30170901-30171119,
30171272-30171619,30171711-30172043,30172548-30172601
Length = 1188
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 51 KWAPPLSIAPRQQKLHLRV*RGVFLRSPLLIS 146
++ PP S PR+ + HL + GV +RSP+ S
Sbjct: 12 QFRPPRS--PRRLRQHLALPSGVLIRSPVRAS 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,955,016
Number of Sequences: 37544
Number of extensions: 78508
Number of successful extensions: 252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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