Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J03
         (155 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...    87   4e-18
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...    87   4e-18
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...    87   4e-18
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...    79   8e-16
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...    29   0.88 
BT024453-1|ABC86515.1|  774|Drosophila melanogaster GH09076p pro...    26   6.2  
AJ000261-1|CAA03977.1|  774|Drosophila melanogaster D19B protein.      26   6.2  
AE014296-1093|AAF50678.1|  774|Drosophila melanogaster CG10270-P...    26   6.2  

>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +2

Query: 2   RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADLQAD 154
           RKDWYDVKAP+MF  RQ+G TLVNRTQ  +IAS+ LKGRVFEVSLADLQ D
Sbjct: 27  RKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKD 77


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +2

Query: 2   RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADLQAD 154
           RKDWYDVKAP+MF  RQ+G TLVNRTQ  +IAS+ LKGRVFEVSLADLQ D
Sbjct: 27  RKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKD 77


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +2

Query: 2   RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADLQAD 154
           RKDWYDVKAP+MF  RQ+G TLVNRTQ  +IAS+ LKGRVFEVSLADLQ D
Sbjct: 27  RKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKD 77


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 38/52 (73%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +2

Query: 2   RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLA-DLQAD 154
           RKDWYDVKAP+MF  RQ+G TLVNRTQ  +IAS+  KGRVFEVSL  DLQ D
Sbjct: 27  RKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKD 78


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 113 GRVFEVSLADLQAD 154
           GRVFEVSLADLQ D
Sbjct: 14  GRVFEVSLADLQKD 27


>BT024453-1|ABC86515.1|  774|Drosophila melanogaster GH09076p
           protein.
          Length = 774

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  HVHQETSGHHPCQSHPGNKN 93
           H H ETS  HPC     NK+
Sbjct: 304 HAHTETSAMHPCTYEGCNKS 323


>AJ000261-1|CAA03977.1|  774|Drosophila melanogaster D19B protein.
          Length = 774

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  HVHQETSGHHPCQSHPGNKN 93
           H H ETS  HPC     NK+
Sbjct: 304 HAHTETSAMHPCTYEGCNKS 323


>AE014296-1093|AAF50678.1|  774|Drosophila melanogaster CG10270-PA
           protein.
          Length = 774

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  HVHQETSGHHPCQSHPGNKN 93
           H H ETS  HPC     NK+
Sbjct: 304 HAHTETSAMHPCTYEGCNKS 323


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,018
Number of Sequences: 53049
Number of extensions: 133667
Number of successful extensions: 461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 24,988,368
effective HSP length: 32
effective length of database: 23,290,800
effective search space used: 442525200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)