Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J03
         (155 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    88   9e-19
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    32   0.048
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z82287-6|CAB05318.1|  312|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z80223-9|CAB02322.1|  312|Caenorhabditis elegans Hypothetical pr...    26   4.2  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 87.8 bits (208), Expect = 9e-19
 Identities = 39/48 (81%), Positives = 43/48 (89%)
 Frame = +2

Query: 2   RKDWYDVKAPSMFTKRQVGTTLVNRTQATKIASEGLKGRVFEVSLADL 145
           RK+WYD+KAP+MF  RQVG TL+NRTQ TKIASEGLKGRVFEVSL DL
Sbjct: 25  RKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL 72


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = -3

Query: 129  TSKTRPFRPSDAIFVAWVRLTRVVPTCLLVNMDGA 25
            TSK +P R  D I VA  R T     CL V   GA
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAVQFTGA 2209


>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 27  RRPCSPRDKWAPPLSIAPRQQKL 95
           R P   ++ + PP  I PR+QKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 27  RRPCSPRDKWAPPLSIAPRQQKL 95
           R P   ++ + PP  I PR+QKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 27  RRPCSPRDKWAPPLSIAPRQQKL 95
           R P   ++ + PP  I PR+QKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 27  RRPCSPRDKWAPPLSIAPRQQKL 95
           R P   ++ + PP  I PR+QKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 152 QPGDQQGRPQKHAPLDPQMQ 93
           Q   QQGRPQ++A   PQ Q
Sbjct: 39  QQQQQQGRPQQYAGYPPQRQ 58


>Z82287-6|CAB05318.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK550.6 protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 114 PFRPSDAIFVAWVRLTRVVPT--CLLV 40
           PFRP+D I  AW  + ++     CL+V
Sbjct: 149 PFRPADFICCAWTAMEKITRANGCLVV 175


>Z80223-9|CAB02322.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK550.6 protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 114 PFRPSDAIFVAWVRLTRVVPT--CLLV 40
           PFRP+D I  AW  + ++     CL+V
Sbjct: 149 PFRPADFICCAWTAMEKITRANGCLVV 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,914,953
Number of Sequences: 27780
Number of extensions: 61120
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)