Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J03
         (155 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   1.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              20   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   4.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    18   9.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 34  HVHQETSGHHPCQSHP 81
           H HQ    HHP Q HP
Sbjct: 317 HPHQ----HHPSQYHP 328



 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 25  SAVHVHQETSGHHPCQSH 78
           S  H H+ +S HH   +H
Sbjct: 324 SQYHPHRGSSPHHQHGNH 341


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 57 APPLSIAPRQQKLH 98
          +P ++I PR++K H
Sbjct: 36 SPVITIEPRRRKFH 49


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 32  SMFTKRQVGTTLVNRTQATKIASEGLKGRVFE 127
           S     + G  L+     TK++S+G+ G   E
Sbjct: 355 SFVLNNRAGRFLILTESDTKLSSQGILGEDVE 386


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 60  VPTCLLVNM 34
           +PTCL+V M
Sbjct: 253 IPTCLIVIM 261


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 56   GTTLVNRTQATKIASEGLKGRV 121
            G+T V   Q++K+A++    RV
Sbjct: 1291 GSTRVGEGQSSKVAAQVPTNRV 1312


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 56   GTTLVNRTQATKIASEGLKGRV 121
            G+T V   Q++K+A++    RV
Sbjct: 1287 GSTRVGEGQSSKVAAQVPTNRV 1308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 87  VAWVRLTRVVP 55
           + W R TRV+P
Sbjct: 522 IVWERDTRVLP 532


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -2

Query: 100 RCNFCCLGAID 68
           +C+ C LG +D
Sbjct: 107 KCDDCLLGIVD 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,724
Number of Sequences: 438
Number of extensions: 780
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)