Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J02
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   153   7e-39
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   153   7e-39
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    47   6e-07
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   0.97 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   1.3  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   1.3  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   1.3  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   1.3  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   2.2  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   3.9  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    24   6.8  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    24   6.8  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    24   6.8  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    23   9.0  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   9.0  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    23   9.0  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  153 bits (371), Expect = 7e-39
 Identities = 68/84 (80%), Positives = 78/84 (92%)
 Frame = +2

Query: 20  RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 199
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 200 NNVEMKGSAITGPVAKECADLWPR 271
              EMKGSAITGPVAKECADLWPR
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  153 bits (371), Expect = 7e-39
 Identities = 68/84 (80%), Positives = 78/84 (92%)
 Frame = +2

Query: 20  RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 199
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 200 NNVEMKGSAITGPVAKECADLWPR 271
              EMKGSAITGPVAKECADLWPR
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 47.2 bits (107), Expect = 6e-07
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
 Frame = +2

Query: 41  AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 193
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 194 VNNNVEMKGSAITGPVAKE 250
           VN   E  G+ I   VA E
Sbjct: 91  VNKECEPLGTRILSVVANE 109


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 181 IILEIYEHPVPPSKWFPLPDHHCWHYLFP 95
           ++ EI+ HP    + FPLP       LFP
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFP 466


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 264  HKSAHSLATGPVIAEPFISTLLFTMTPALSSKYMNTPSRLLNGFRCLITTA 112
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 192 MTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPS 13
           +  ALSS+Y    S L        +T  +T  LSS     T +++ +P P    + R P+
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 74  KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 184
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 19  SSEQVTSCWFW*HDCGHS*ERQTRTQEKGNASSG 120
           SS ++T CWFW         R     E G A+ G
Sbjct: 366 SSNEITHCWFWPKFSEFLKPRDVLITETGTANFG 399


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 59  IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 190
           IV    KGK  L   + P++ I       R  G  +Y ED  GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 152 DGVFIYFEDNAGVIVNNNVEMKGSAI 229
           DG  +  E N  ++VN   +M+G+A+
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 276 AIRGHKSAHSLATGPVIAE----PFISTLLFTMTPALS 175
           ++  H S H+ +   V ++    P +STL F++ P+LS
Sbjct: 44  SLPSHPSTHNSSVAYVDSQDNKPPLVSTLHFSLAPSLS 81


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 145 SKWFPLPDHHCWHYLF 98
           S W  LPD   WH+++
Sbjct: 216 SAWRKLPDAEAWHHIW 231


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 279 DAIRGHKSAHSLATGPVIAEPFISTLLFTMTP 184
           + +  + S HS+AT   I+ P  S+  F  TP
Sbjct: 293 EILHANSSVHSVATEATISNPRPSSGRFQQTP 324


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 142 KWFPLPDHHC 113
           KWFP   HHC
Sbjct: 96  KWFPEVHHHC 105


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 151 PPSKWFPLPD 122
           PP KW P+PD
Sbjct: 537 PPPKWKPMPD 546


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 288 LALDAIRGHKSAHSLATGPVIAEPFISTLLFT 193
           L LD IRG  ++   AT P I++  ++   FT
Sbjct: 270 LLLDPIRGAMTSLYAATSPEISKEHLNGAYFT 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,360
Number of Sequences: 5004
Number of extensions: 26824
Number of successful extensions: 81
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)