Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J02
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 154 1e-38
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 154 1e-38
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 154 1e-38
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 51 2e-07
11_01_0122 - 960346-960728,961356-961608 31 0.17
04_04_0335 - 24491000-24491003,24491636-24491670,24491875-244919... 30 0.38
02_04_0529 + 23697249-23697419,23697610-23697726,23698292-236983... 28 1.5
02_02_0500 - 10993675-10994067,10994434-10995738 28 2.0
07_03_0138 - 14140653-14140988 27 2.7
02_05_0591 - 30183105-30183869 27 2.7
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 27 3.6
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 27 3.6
11_03_0131 + 10497674-10499617 27 4.7
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 27 4.7
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728... 27 4.7
11_06_0538 + 24759030-24759379,24759380-24759488,24759604-247596... 26 6.2
08_02_0219 + 14407834-14408083,14409100-14409209,14409609-144096... 26 6.2
07_03_0137 + 14101849-14102511 26 6.2
03_01_0585 - 4331111-4331850,4331960-4332224 26 6.2
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985... 26 8.3
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 26 8.3
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 154 bits (374), Expect = 1e-38
Identities = 68/86 (79%), Positives = 80/86 (93%)
Frame = +2
Query: 14 EGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 193
+GRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVI
Sbjct: 46 KGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVI 105
Query: 194 VNNNVEMKGSAITGPVAKECADLWPR 271
VN EMKGSAITGP+ KECADLWPR
Sbjct: 106 VNPKGEMKGSAITGPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 154 bits (374), Expect = 1e-38
Identities = 68/86 (79%), Positives = 80/86 (93%)
Frame = +2
Query: 14 EGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 193
+GRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVI
Sbjct: 46 KGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVI 105
Query: 194 VNNNVEMKGSAITGPVAKECADLWPR 271
VN EMKGSAITGP+ KECADLWPR
Sbjct: 106 VNPKGEMKGSAITGPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 154 bits (374), Expect = 1e-38
Identities = 68/86 (79%), Positives = 80/86 (93%)
Frame = +2
Query: 14 EGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 193
+GRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVI
Sbjct: 63 KGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVI 122
Query: 194 VNNNVEMKGSAITGPVAKECADLWPR 271
VN EMKGSAITGP+ KECADLWPR
Sbjct: 123 VNPKGEMKGSAITGPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 51.2 bits (117), Expect = 2e-07
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Frame = +2
Query: 50 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNNVEMKG 220
GD I+ +VK+ +P + K V+ VV+R R DG I F+DNA V+VNN E+ G
Sbjct: 84 GDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIG 143
Query: 221 SAITGPVAKE 250
+ + GPV E
Sbjct: 144 TRVFGPVPHE 153
>11_01_0122 - 960346-960728,961356-961608
Length = 211
Score = 31.5 bits (68), Expect = 0.17
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 295 YGAGVRRNTGP*VSALLSDGSCDSRAFHLHIVVHDDPRIILE 170
YGAG R G +A LSDG C +R LH++ H + E
Sbjct: 62 YGAGGARARGS--AAALSDGVCGARVQQLHLLQHPVKNAVAE 101
>04_04_0335 -
24491000-24491003,24491636-24491670,24491875-24491923,
24492043-24492119,24492207-24492340,24492471-24492578,
24493145-24493214,24493399-24493476,24493592-24493714,
24494238-24494297,24494424-24494468,24494936-24495013,
24495298-24495354,24495623-24495739,24495856-24496026
Length = 401
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = -1
Query: 285 ALDAIRGHKSAHSLATGPVIAEPFISTLLFTMTPALSSKYMNTPSRLLNGFRC---LITT 115
+ D +RGH A A+ +S+ F + KY +T + + G L T
Sbjct: 270 SFDILRGHSRATMFLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAAFLGHT 329
Query: 114 AGITFFLSSGLPFLTVATIMSP 49
+ F L + F+++ SP
Sbjct: 330 LTVNFLLGISIVFISMHQFFSP 351
>02_04_0529 +
23697249-23697419,23697610-23697726,23698292-23698348,
23698539-23698616,23698722-23698766,23698858-23698917,
23699340-23699417,23699524-23699646,23699772-23699849,
23700048-23700117,23700317-23700424,23700543-23700676,
23700756-23700832,23701027-23701075,23701689-23701697
Length = 417
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = -1
Query: 285 ALDAIRGHKSAHSLATGPVIAEPFISTLLFTMTPALSSKYMNTPSRLLNGFRC---LITT 115
+ + +RGH A A+ +S+ F + KY +T + + G L T
Sbjct: 296 SFNILRGHSRATMFLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAAFLGHT 355
Query: 114 AGITFFLSSGLPFLTVATIMSP 49
I F L + F+++ SP
Sbjct: 356 LTINFLLGISVVFISMHQFFSP 377
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -1
Query: 234 PVIAEPFISTLLFTMTPALSSKYMNTPSRLLNGFRCLITT--AGITFFL--SSGLPFLTV 67
P EP I+ ++PA+ +T S + NG+ +++T +G +F+ SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 66 ATIMSPEPAAGN 31
+ EP A N
Sbjct: 285 FKPIDEEPMAKN 296
>07_03_0138 - 14140653-14140988
Length = 111
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 64 GHS*ERQTRTQEKGNASSGDQAAETI*KAGRGVHIFRG*CGGHREQQCGDERLGYHRTR 240
G ERQ Q +G S G++ E + G G F G GG E + ER R+R
Sbjct: 46 GREGERQRGRQWRGRGSGGEEGVEGGGEGGEGGG-FGGGEGGGGEVEAAVERRAAERSR 103
>02_05_0591 - 30183105-30183869
Length = 254
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 205 IVVHDDPRIILEIYEHPVPPSKWFPLPDHHCWHYLFP 95
+V H D ++ +Y P P P HH +H L P
Sbjct: 157 MVTHHDMQMHAAMYGGGAVPPPPHPPPHHHAFHQLMP 193
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 116 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNNVEMKGSAITGPVAKECADL 262
+++ QR F + FE NAG+ + NNV++K A + + ++C L
Sbjct: 611 MIVLQRLKFNE---AWSLFESNAGIRITNNVQVKCHAES--IVEKCGGL 654
>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 27.1 bits (57), Expect = 3.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 148 PSKWFPLPDHHCW 110
P WFP PD +CW
Sbjct: 1420 PWFWFPSPDRNCW 1432
>11_03_0131 + 10497674-10499617
Length = 647
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -1
Query: 201 LFTMTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFR 22
LF + P L + + S+LL GF+ + +TAG G + TI P+P G+ F
Sbjct: 136 LFPLKPGLLACNLGF-SQLLFGFQPMESTAG------GGDKGIVGETIAHPKPTGGDRFV 188
Query: 21 RPS 13
+PS
Sbjct: 189 QPS 191
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 178 ILEIYEHPVPPSKWFPLPDHHCWHYLFP-EFWFAFLN 71
IL Y+H +P L + HC + P + W F+N
Sbjct: 737 ILGCYDHLLPEHIRLDLQEQHCNDHKVPDDLWLEFIN 773
>03_03_0140 +
14771293-14771821,14772343-14772455,14772723-14772830,
14772931-14772973,14773454-14773593,14774216-14774446
Length = 387
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 255 AHSLATGPVIAEPFISTLLFTMTPALSSKYMNTPSRLLNGFRCLITTA 112
AH ATGP + + +TP LSS + + P+R + R LI A
Sbjct: 76 AHVFATGPGGRPDLARSAVMRVTPGLSS-FADEPARAGDSLRPLIDFA 122
>11_06_0538 +
24759030-24759379,24759380-24759488,24759604-24759692,
24760179-24760287,24760370-24760471,24760564-24760628,
24760830-24760936,24761023-24761087,24761163-24761217,
24761305-24761465
Length = 403
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -1
Query: 201 LFTMTPALSSKY-MNTPSRLLNGFRCLITT--AGITFFLSSGLPFLTVATIMSPEPAAGN 31
L T P + M SRL R L AG+ FF S+ + + I+ P P++
Sbjct: 37 LLTQRPCVEGTMTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYYYAPLLILPPPPSSFP 96
Query: 30 LFR 22
LF+
Sbjct: 97 LFQ 99
>08_02_0219 +
14407834-14408083,14409100-14409209,14409609-14409656,
14409812-14409886,14409991-14410102,14410414-14410465,
14410550-14410601,14410767-14410824,14411094-14411192,
14411299-14411429
Length = 328
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 252 HSLATGPVIAEPFISTLLFTMTPALSSKYMNTPSRLLNGFRCLITTAGITFFLS 91
HSLA GP + +P + T ALS+ + S LL F ++ G + L+
Sbjct: 154 HSLANGPEVTKPLLETSRRGYLAALSASSYSFVS-LLQHFLPIMNPGGASISLT 206
>07_03_0137 + 14101849-14102511
Length = 220
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 64 GHS*ERQTRTQEKGNASSGDQAAETI*KAGRG 159
G +R +E G A +GD +T +AGRG
Sbjct: 85 GRGGQRDAGDEEDGKAGAGDGGLQTNQRAGRG 116
>03_01_0585 - 4331111-4331850,4331960-4332224
Length = 334
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/95 (23%), Positives = 35/95 (36%)
Frame = -1
Query: 324 FNVP*RYIQAMELALDAIRGHKSAHSLATGPVIAEPFISTLLFTMTPALSSKYMNTPSRL 145
FN P +A ++ +RG K+ + P A P T P ++ P R
Sbjct: 140 FNTPEEAARAYDVEARRLRGSKAKVNFPATPAAARPRRGNTRATAVPPPATAPAAAPPRG 199
Query: 144 LNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPA 40
L + FF + F+ + T +P PA
Sbjct: 200 LKREFSPPAETALPFFTNG---FVDLTTAAAPPPA 231
>11_03_0093 -
9852075-9852871,9852911-9853009,9853208-9853646,
9853803-9854129
Length = 553
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 129 SGNHLEGGTGCSYISRIMRGS 191
S NHL+ TG ++ S+++RG+
Sbjct: 123 SRNHLDAATGGAFFSKMVRGA 143
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 25.8 bits (54), Expect = 8.3
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = -1
Query: 285 ALDAIRGHKS----AHSLATGPVIAEPFIS-TLLFTMTPALSSKYMNTPSRLLNGFRCLI 121
AL + H++ A S ++G +++ TLL ++ S ++ S LLN + C +
Sbjct: 153 ALSPLNHHRAFGGGAESGSSGAATRARWVTGTLLMLLSNVTWSLWIVLMSPLLNEYPCKM 212
Query: 120 TTAGITFFLSSGLPFLTVATIMSPEPAAGNL 28
+ LS+ + A + PAA L
Sbjct: 213 LATALQSLLSAAQSLVLAAAAAARNPAARRL 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,819,688
Number of Sequences: 37544
Number of extensions: 213547
Number of successful extensions: 606
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -