Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J02
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   3.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   3.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 139 WFPLPDHHC 113
           WFP  D HC
Sbjct: 117 WFPFDDQHC 125


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 139 WFPLPDHHC 113
           WFP  D HC
Sbjct: 117 WFPFDDQHC 125


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 139 WFPLPDHHC 113
           WFP  D HC
Sbjct: 117 WFPFDDQHC 125


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 139 WFPLPDHHC 113
           WFP  D HC
Sbjct: 117 WFPFDDQHC 125


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 139 WFPLPDHHC 113
           WFP  D HC
Sbjct: 117 WFPFDDQHC 125


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 139 WFPLPDHHC 113
           WFP  D HC
Sbjct: 117 WFPFDDQHC 125


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 139 WFPLPDHHC 113
           WFP  D HC
Sbjct: 185 WFPFDDQHC 193


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 139 WFPLPDHHC 113
           WFP  D HC
Sbjct: 185 WFPFDDQHC 193


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 148 PSKWFPLPDHHCWHYLF 98
           PSK + LPD+    YL+
Sbjct: 245 PSKEYDLPDYRGEEYLY 261


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 148 PSKWFPLPDHHCWHYLF 98
           PSK + LPD+    YL+
Sbjct: 245 PSKEYDLPDYRGEEYLY 261


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = -3

Query: 223 RAFHLHIVVHDDPRIILEIYEHPVPP 146
           +   LHI  H D  ++    + P+ P
Sbjct: 273 KTMELHIKTHSDSSVVGSPRDSPIEP 298


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 8    RHEGRLNRLPAAGSG 52
            R  GR +R+P+ G G
Sbjct: 1782 RQNGRYSRVPSQGGG 1796


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 177 SSKYMNTPSRLLNGFRCLITTAGI 106
           + KY N P  L   F     TAG+
Sbjct: 215 NDKYSNVPYFLFGDFNFRTDTAGV 238


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 205 CGDERLGYH 231
           CGD   GYH
Sbjct: 190 CGDRASGYH 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,738
Number of Sequences: 438
Number of extensions: 2076
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)